miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27634 3' -58.4 NC_005882.1 + 3328 1.14 0.000115
Target:  5'- cGCAGCGCCCGCGCGCAAGCGUUCAGCa -3'
miRNA:   3'- -CGUCGCGGGCGCGCGUUCGCAAGUCG- -5'
27634 3' -58.4 NC_005882.1 + 17155 0.79 0.049264
Target:  5'- cCAGCGCCUGCGCGUcGGCaUUCAGg -3'
miRNA:   3'- cGUCGCGGGCGCGCGuUCGcAAGUCg -5'
27634 3' -58.4 NC_005882.1 + 9229 0.79 0.052257
Target:  5'- gGCgAGCGCCUGCGCGagGAGCGUgagCGGUu -3'
miRNA:   3'- -CG-UCGCGGGCGCGCg-UUCGCAa--GUCG- -5'
27634 3' -58.4 NC_005882.1 + 23271 0.78 0.058781
Target:  5'- cCAGCGCCUGCGCG--AGCGUcgugccgaUCGGCg -3'
miRNA:   3'- cGUCGCGGGCGCGCguUCGCA--------AGUCG- -5'
27634 3' -58.4 NC_005882.1 + 27870 0.77 0.074275
Target:  5'- cGCGGCGCUCGCGCuucGCGAGCaGgucgUCgAGCa -3'
miRNA:   3'- -CGUCGCGGGCGCG---CGUUCG-Ca---AG-UCG- -5'
27634 3' -58.4 NC_005882.1 + 19540 0.77 0.081041
Target:  5'- aGCAGCaGCUCGCcgacGCGCAGGCGcgUgAGCg -3'
miRNA:   3'- -CGUCG-CGGGCG----CGCGUUCGCa-AgUCG- -5'
27634 3' -58.4 NC_005882.1 + 19149 0.76 0.090983
Target:  5'- uGUAGCGCCCG-GCGCcgacgaGUUCGGCg -3'
miRNA:   3'- -CGUCGCGGGCgCGCGuucg--CAAGUCG- -5'
27634 3' -58.4 NC_005882.1 + 35581 0.76 0.096379
Target:  5'- uGCAGCagGCCCGCGuCGCcaaauAGUGUUgAGCc -3'
miRNA:   3'- -CGUCG--CGGGCGC-GCGu----UCGCAAgUCG- -5'
27634 3' -58.4 NC_005882.1 + 12542 0.75 0.099189
Target:  5'- gGCGGCGgCCG-GCGCugcGGCGaUCGGCg -3'
miRNA:   3'- -CGUCGCgGGCgCGCGu--UCGCaAGUCG- -5'
27634 3' -58.4 NC_005882.1 + 12122 0.75 0.099189
Target:  5'- aCGGCGUCCGCGCGCcAGCGgcucUCcuGGUg -3'
miRNA:   3'- cGUCGCGGGCGCGCGuUCGCa---AG--UCG- -5'
27634 3' -58.4 NC_005882.1 + 6645 0.75 0.102076
Target:  5'- uGCGGCGCgCCGUGCGUcucGGCGUgCuGCg -3'
miRNA:   3'- -CGUCGCG-GGCGCGCGu--UCGCAaGuCG- -5'
27634 3' -58.4 NC_005882.1 + 15166 0.75 0.102076
Target:  5'- uGCAG-GCCCaGCGCaGCAccGGCGUgUCAGCc -3'
miRNA:   3'- -CGUCgCGGG-CGCG-CGU--UCGCA-AGUCG- -5'
27634 3' -58.4 NC_005882.1 + 10954 0.74 0.11908
Target:  5'- cGCAuGCGCCCGCGCGCGcugcgacgaacccacGaccagguugaucGCGgaCAGCa -3'
miRNA:   3'- -CGU-CGCGGGCGCGCGU---------------U------------CGCaaGUCG- -5'
27634 3' -58.4 NC_005882.1 + 4991 0.74 0.124604
Target:  5'- gGCAGUGCCuUGCccuUGCGAGCGgcUUCAGCg -3'
miRNA:   3'- -CGUCGCGG-GCGc--GCGUUCGC--AAGUCG- -5'
27634 3' -58.4 NC_005882.1 + 25584 0.74 0.128177
Target:  5'- cGCGGCGCCgCGCuGCGUGAGCaacgccagggGcUCGGCg -3'
miRNA:   3'- -CGUCGCGG-GCG-CGCGUUCG----------CaAGUCG- -5'
27634 3' -58.4 NC_005882.1 + 8726 0.73 0.13869
Target:  5'- cGCAGCGCCUGCGaa-AAGCGUacgccgucgacgCAGCc -3'
miRNA:   3'- -CGUCGCGGGCGCgcgUUCGCAa-----------GUCG- -5'
27634 3' -58.4 NC_005882.1 + 22404 0.73 0.139471
Target:  5'- cGCAGCgccgucgaccaaGCCCGCGCGCcccAGCGUgcCGGa -3'
miRNA:   3'- -CGUCG------------CGGGCGCGCGu--UCGCAa-GUCg -5'
27634 3' -58.4 NC_005882.1 + 19609 0.73 0.1475
Target:  5'- cGCucacGCGCCUGCGCGUcGGCGagCuGCu -3'
miRNA:   3'- -CGu---CGCGGGCGCGCGuUCGCaaGuCG- -5'
27634 3' -58.4 NC_005882.1 + 20936 0.72 0.160334
Target:  5'- cCGGCGUCCGCGC-CGAGCagGUaCGGCc -3'
miRNA:   3'- cGUCGCGGGCGCGcGUUCG--CAaGUCG- -5'
27634 3' -58.4 NC_005882.1 + 25636 0.72 0.164831
Target:  5'- cGCAGCGCggcgCCGCGCGCcAGCcgggUC-GCa -3'
miRNA:   3'- -CGUCGCG----GGCGCGCGuUCGca--AGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.