miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27634 3' -58.4 NC_005882.1 + 25661 0.7 0.240557
Target:  5'- gGCcGCGCCCGUaaucgGCGC---UGUUCGGCa -3'
miRNA:   3'- -CGuCGCGGGCG-----CGCGuucGCAAGUCG- -5'
27634 3' -58.4 NC_005882.1 + 28270 0.71 0.205047
Target:  5'- cCGGCGgCCGCGCagGCGgucuccAGCGUcacaUCGGCg -3'
miRNA:   3'- cGUCGCgGGCGCG--CGU------UCGCA----AGUCG- -5'
27634 3' -58.4 NC_005882.1 + 7699 0.71 0.210633
Target:  5'- -aGGCGCUCGCGgGC-GGCGUcgaGGCu -3'
miRNA:   3'- cgUCGCGGGCGCgCGuUCGCAag-UCG- -5'
27634 3' -58.4 NC_005882.1 + 36506 0.71 0.21635
Target:  5'- cGCGGCGaaaGCGCGCAGacCGUUCAGg -3'
miRNA:   3'- -CGUCGCgggCGCGCGUUc-GCAAGUCg -5'
27634 3' -58.4 NC_005882.1 + 10897 0.7 0.222199
Target:  5'- cGCAGCGCgCGCggGCGCAuGCGgauuUC-GCa -3'
miRNA:   3'- -CGUCGCGgGCG--CGCGUuCGCa---AGuCG- -5'
27634 3' -58.4 NC_005882.1 + 34469 0.7 0.222199
Target:  5'- aCGGCGUuuGUGCaGCGGGCcgUCGGCu -3'
miRNA:   3'- cGUCGCGggCGCG-CGUUCGcaAGUCG- -5'
27634 3' -58.4 NC_005882.1 + 19795 0.7 0.228182
Target:  5'- aGCA-CGCCa-CGCGCGAGCGcgcCGGCg -3'
miRNA:   3'- -CGUcGCGGgcGCGCGUUCGCaa-GUCG- -5'
27634 3' -58.4 NC_005882.1 + 21093 0.7 0.228182
Target:  5'- uGC-GCaGCCgGCGCGaAGGCGcUCGGCg -3'
miRNA:   3'- -CGuCG-CGGgCGCGCgUUCGCaAGUCG- -5'
27634 3' -58.4 NC_005882.1 + 5068 0.7 0.234301
Target:  5'- -aAGCGCauGCuGCGCuGGCGUaUCGGCg -3'
miRNA:   3'- cgUCGCGggCG-CGCGuUCGCA-AGUCG- -5'
27634 3' -58.4 NC_005882.1 + 11935 0.71 0.189053
Target:  5'- cGCcGCGCCCGUggccGCGCAAGUGcccgccgaGGCg -3'
miRNA:   3'- -CGuCGCGGGCG----CGCGUUCGCaag-----UCG- -5'
27634 3' -58.4 NC_005882.1 + 23434 0.72 0.179009
Target:  5'- uCGGCGUCaCGgGCGuCGAGCGgccgcugUCGGCg -3'
miRNA:   3'- cGUCGCGG-GCgCGC-GUUCGCa------AGUCG- -5'
27634 3' -58.4 NC_005882.1 + 27570 0.72 0.179009
Target:  5'- gGCGGuCGCCgCGCGCGCG-GCcgcCGGCa -3'
miRNA:   3'- -CGUC-GCGG-GCGCGCGUuCGcaaGUCG- -5'
27634 3' -58.4 NC_005882.1 + 9229 0.79 0.052257
Target:  5'- gGCgAGCGCCUGCGCGagGAGCGUgagCGGUu -3'
miRNA:   3'- -CG-UCGCGGGCGCGCg-UUCGCAa--GUCG- -5'
27634 3' -58.4 NC_005882.1 + 19540 0.77 0.081041
Target:  5'- aGCAGCaGCUCGCcgacGCGCAGGCGcgUgAGCg -3'
miRNA:   3'- -CGUCG-CGGGCG----CGCGUUCGCa-AgUCG- -5'
27634 3' -58.4 NC_005882.1 + 35581 0.76 0.096379
Target:  5'- uGCAGCagGCCCGCGuCGCcaaauAGUGUUgAGCc -3'
miRNA:   3'- -CGUCG--CGGGCGC-GCGu----UCGCAAgUCG- -5'
27634 3' -58.4 NC_005882.1 + 12542 0.75 0.099189
Target:  5'- gGCGGCGgCCG-GCGCugcGGCGaUCGGCg -3'
miRNA:   3'- -CGUCGCgGGCgCGCGu--UCGCaAGUCG- -5'
27634 3' -58.4 NC_005882.1 + 6645 0.75 0.102076
Target:  5'- uGCGGCGCgCCGUGCGUcucGGCGUgCuGCg -3'
miRNA:   3'- -CGUCGCG-GGCGCGCGu--UCGCAaGuCG- -5'
27634 3' -58.4 NC_005882.1 + 4991 0.74 0.124604
Target:  5'- gGCAGUGCCuUGCccuUGCGAGCGgcUUCAGCg -3'
miRNA:   3'- -CGUCGCGG-GCGc--GCGUUCGC--AAGUCG- -5'
27634 3' -58.4 NC_005882.1 + 25584 0.74 0.128177
Target:  5'- cGCGGCGCCgCGCuGCGUGAGCaacgccagggGcUCGGCg -3'
miRNA:   3'- -CGUCGCGG-GCG-CGCGUUCG----------CaAGUCG- -5'
27634 3' -58.4 NC_005882.1 + 22404 0.73 0.139471
Target:  5'- cGCAGCgccgucgaccaaGCCCGCGCGCcccAGCGUgcCGGa -3'
miRNA:   3'- -CGUCG------------CGGGCGCGCGu--UCGCAa-GUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.