miRNA display CGI


Results 1 - 20 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27634 3' -58.4 NC_005882.1 + 1298 0.7 0.253488
Target:  5'- aCGGUGgCCGCGaGgAAGCGcgCAGCa -3'
miRNA:   3'- cGUCGCgGGCGCgCgUUCGCaaGUCG- -5'
27634 3' -58.4 NC_005882.1 + 1397 0.69 0.295708
Target:  5'- aGCGGCacgGCCCGCuC-CAGGCGUUUcugaAGCu -3'
miRNA:   3'- -CGUCG---CGGGCGcGcGUUCGCAAG----UCG- -5'
27634 3' -58.4 NC_005882.1 + 1615 0.66 0.395947
Target:  5'- cGCGGCgacGCCCGaUGCGaUggGCGUcgacccgugCGGCg -3'
miRNA:   3'- -CGUCG---CGGGC-GCGC-GuuCGCAa--------GUCG- -5'
27634 3' -58.4 NC_005882.1 + 2038 0.68 0.334916
Target:  5'- cGUA-CGUCCGCGUcuaCGAGCGcgUCGGCg -3'
miRNA:   3'- -CGUcGCGGGCGCGc--GUUCGCa-AGUCG- -5'
27634 3' -58.4 NC_005882.1 + 3265 0.71 0.209505
Target:  5'- uGCuGCGCgaGCGUGCGGGCGgcgucacugucCAGCg -3'
miRNA:   3'- -CGuCGCGggCGCGCGUUCGCaa---------GUCG- -5'
27634 3' -58.4 NC_005882.1 + 3328 1.14 0.000115
Target:  5'- cGCAGCGCCCGCGCGCAAGCGUUCAGCa -3'
miRNA:   3'- -CGUCGCGGGCGCGCGUUCGCAAGUCG- -5'
27634 3' -58.4 NC_005882.1 + 3391 0.71 0.194258
Target:  5'- uGCugaaCGCuuGCGCGCGGGCGcugcgCGGCc -3'
miRNA:   3'- -CGuc--GCGggCGCGCGUUCGCaa---GUCG- -5'
27634 3' -58.4 NC_005882.1 + 3666 0.66 0.424209
Target:  5'- aGCGGCG-UCGaCGCGCu-GCGcacUCGGCu -3'
miRNA:   3'- -CGUCGCgGGC-GCGCGuuCGCa--AGUCG- -5'
27634 3' -58.4 NC_005882.1 + 4695 0.69 0.288308
Target:  5'- uGCAGCGguugcuguugaCCCGCuCGCGGGCcgGUaagcUCGGCg -3'
miRNA:   3'- -CGUCGC-----------GGGCGcGCGUUCG--CA----AGUCG- -5'
27634 3' -58.4 NC_005882.1 + 4991 0.74 0.124604
Target:  5'- gGCAGUGCCuUGCccuUGCGAGCGgcUUCAGCg -3'
miRNA:   3'- -CGUCGCGG-GCGc--GCGUUCGC--AAGUCG- -5'
27634 3' -58.4 NC_005882.1 + 5068 0.7 0.234301
Target:  5'- -aAGCGCauGCuGCGCuGGCGUaUCGGCg -3'
miRNA:   3'- cgUCGCGggCG-CGCGuUCGCA-AGUCG- -5'
27634 3' -58.4 NC_005882.1 + 5477 0.68 0.318791
Target:  5'- uGCAuaCGCCaGCGUuucGCAAgcGCGUUCAGCu -3'
miRNA:   3'- -CGUc-GCGGgCGCG---CGUU--CGCAAGUCG- -5'
27634 3' -58.4 NC_005882.1 + 6398 0.67 0.350781
Target:  5'- cGUGGcCGgCCGCGCGCGcugccugGGCGa-CAGCc -3'
miRNA:   3'- -CGUC-GCgGGCGCGCGU-------UCGCaaGUCG- -5'
27634 3' -58.4 NC_005882.1 + 6456 0.68 0.303255
Target:  5'- gGCAGCGCgCGCG-GCcGGCca-CGGCa -3'
miRNA:   3'- -CGUCGCGgGCGCgCGuUCGcaaGUCG- -5'
27634 3' -58.4 NC_005882.1 + 6645 0.75 0.102076
Target:  5'- uGCGGCGCgCCGUGCGUcucGGCGUgCuGCg -3'
miRNA:   3'- -CGUCGCG-GGCGCGCGu--UCGCAaGuCG- -5'
27634 3' -58.4 NC_005882.1 + 7541 0.71 0.194258
Target:  5'- gGCGGUGCCCGC-CGaguccuggcGCGUUCAGa -3'
miRNA:   3'- -CGUCGCGGGCGcGCguu------CGCAAGUCg -5'
27634 3' -58.4 NC_005882.1 + 7699 0.71 0.210633
Target:  5'- -aGGCGCUCGCGgGC-GGCGUcgaGGCu -3'
miRNA:   3'- cgUCGCGGGCGCgCGuUCGCAag-UCG- -5'
27634 3' -58.4 NC_005882.1 + 8355 0.7 0.240557
Target:  5'- uGCGcCGCUCGCGCGCAuGCucuuuacagaGUUCAaGCg -3'
miRNA:   3'- -CGUcGCGGGCGCGCGUuCG----------CAAGU-CG- -5'
27634 3' -58.4 NC_005882.1 + 8414 0.68 0.32678
Target:  5'- -aAGaGCauGCGCGCGAGCGgcgcaaucUCAGCg -3'
miRNA:   3'- cgUCgCGggCGCGCGUUCGCa-------AGUCG- -5'
27634 3' -58.4 NC_005882.1 + 8726 0.73 0.13869
Target:  5'- cGCAGCGCCUGCGaa-AAGCGUacgccgucgacgCAGCc -3'
miRNA:   3'- -CGUCGCGGGCGCgcgUUCGCAa-----------GUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.