Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27647 | 3' | -64.6 | NC_005882.1 | + | 15117 | 0.66 | 0.194437 |
Target: 5'- cAGCGCGCgcgacagccaugcGCCGCCGCUguucuUCgGCaCGCa -3' miRNA: 3'- -UUGUGCGa------------CGGCGGCGG-----AGgCG-GCGa -5' |
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27647 | 3' | -64.6 | NC_005882.1 | + | 16056 | 0.66 | 0.191383 |
Target: 5'- cGCACGCacccGCCGacgugCGCgUCCGCgCGCa -3' miRNA: 3'- uUGUGCGa---CGGCg----GCGgAGGCG-GCGa -5' |
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27647 | 3' | -64.6 | NC_005882.1 | + | 17208 | 0.66 | 0.189872 |
Target: 5'- gGACGCGCUGCaggaacggcuugccCGCgCGaUCUUCGUCGCg -3' miRNA: 3'- -UUGUGCGACG--------------GCG-GC-GGAGGCGGCGa -5' |
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27647 | 3' | -64.6 | NC_005882.1 | + | 10354 | 0.66 | 0.185894 |
Target: 5'- gAugAUGCUGCCGaCCGCguacguuUUCC-CCGCa -3' miRNA: 3'- -UugUGCGACGGC-GGCG-------GAGGcGGCGa -5' |
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27647 | 3' | -64.6 | NC_005882.1 | + | 6691 | 0.66 | 0.176739 |
Target: 5'- cGGCACGCagGuuGCCGCgaauaaccgaCUCCGCCu-- -3' miRNA: 3'- -UUGUGCGa-CggCGGCG----------GAGGCGGcga -5' |
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27647 | 3' | -64.6 | NC_005882.1 | + | 7782 | 0.66 | 0.172083 |
Target: 5'- -cCACGCcGUCGCCauccuccguaGCCUCgaCGCCGCc -3' miRNA: 3'- uuGUGCGaCGGCGG----------CGGAG--GCGGCGa -5' |
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27647 | 3' | -64.6 | NC_005882.1 | + | 26208 | 0.67 | 0.167537 |
Target: 5'- -uCGCcaCUGCCGgCGCCUUCGCgGCc -3' miRNA: 3'- uuGUGc-GACGGCgGCGGAGGCGgCGa -5' |
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27647 | 3' | -64.6 | NC_005882.1 | + | 6528 | 0.67 | 0.1631 |
Target: 5'- -uCACGCaGCCauugcgggacGUCGUCUCCGuCCGCa -3' miRNA: 3'- uuGUGCGaCGG----------CGGCGGAGGC-GGCGa -5' |
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27647 | 3' | -64.6 | NC_005882.1 | + | 25382 | 0.67 | 0.158768 |
Target: 5'- cGGCACGCgcacgaCGCUgaaugGCCUCgGCCGCg -3' miRNA: 3'- -UUGUGCGacg---GCGG-----CGGAGgCGGCGa -5' |
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27647 | 3' | -64.6 | NC_005882.1 | + | 26110 | 0.67 | 0.15454 |
Target: 5'- gGACGCGCUGacgcagaucaUCGCCaGCCUCgaagucgGCCGCg -3' miRNA: 3'- -UUGUGCGAC----------GGCGG-CGGAGg------CGGCGa -5' |
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27647 | 3' | -64.6 | NC_005882.1 | + | 21742 | 0.67 | 0.15454 |
Target: 5'- cGCGCGC-GCCGUCGCCagUUCGaCGCg -3' miRNA: 3'- uUGUGCGaCGGCGGCGG--AGGCgGCGa -5' |
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27647 | 3' | -64.6 | NC_005882.1 | + | 12887 | 0.67 | 0.150414 |
Target: 5'- -cCGCGUguggaacGCCGCCGCCggCGCCGa- -3' miRNA: 3'- uuGUGCGa------CGGCGGCGGagGCGGCga -5' |
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27647 | 3' | -64.6 | NC_005882.1 | + | 21038 | 0.67 | 0.146389 |
Target: 5'- uAC-CGCUGCCGCCGgCCUgaaCCGCUu -3' miRNA: 3'- uUGuGCGACGGCGGC-GGAggcGGCGA- -5' |
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27647 | 3' | -64.6 | NC_005882.1 | + | 25639 | 0.68 | 0.138633 |
Target: 5'- cAUACGCgacgGCgGCUGCCaCgGCCGCg -3' miRNA: 3'- uUGUGCGa---CGgCGGCGGaGgCGGCGa -5' |
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27647 | 3' | -64.6 | NC_005882.1 | + | 11919 | 0.68 | 0.131255 |
Target: 5'- -uCGCGUUGCucggCGCCGCCgcgCCcgugGCCGCg -3' miRNA: 3'- uuGUGCGACG----GCGGCGGa--GG----CGGCGa -5' |
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27647 | 3' | -64.6 | NC_005882.1 | + | 21495 | 0.68 | 0.12424 |
Target: 5'- cGACGCGCacuugcGCgGCCGCUacaacCUGCCGCUg -3' miRNA: 3'- -UUGUGCGa-----CGgCGGCGGa----GGCGGCGA- -5' |
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27647 | 3' | -64.6 | NC_005882.1 | + | 12593 | 0.68 | 0.120865 |
Target: 5'- --aGCGCcgGCCGCCGCCgcgacacacUgGCCGCg -3' miRNA: 3'- uugUGCGa-CGGCGGCGGa--------GgCGGCGa -5' |
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27647 | 3' | -64.6 | NC_005882.1 | + | 11811 | 0.69 | 0.105234 |
Target: 5'- gAGCugGUguucGCCGCgGCCaugcUUCGCCGCg -3' miRNA: 3'- -UUGugCGa---CGGCGgCGG----AGGCGGCGa -5' |
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27647 | 3' | -64.6 | NC_005882.1 | + | 27581 | 0.7 | 0.089991 |
Target: 5'- cGCGCGCgGCCGCCggcauggcgacgcagGCCgCgGCCGCg -3' miRNA: 3'- uUGUGCGaCGGCGG---------------CGGaGgCGGCGa -5' |
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27647 | 3' | -64.6 | NC_005882.1 | + | 26642 | 0.7 | 0.088986 |
Target: 5'- cGCGCGCUGCUGCCGucgcucacggaCCugaugaacacggUCaCGCCGCUg -3' miRNA: 3'- uUGUGCGACGGCGGC-----------GG------------AG-GCGGCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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