miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27685 3' -47.5 NC_005882.1 + 27409 1.15 0.001561
Target:  5'- cGCAAUCGCUUCACGGCUGCGAAAAACa -3'
miRNA:   3'- -CGUUAGCGAAGUGCCGACGCUUUUUG- -5'
27685 3' -47.5 NC_005882.1 + 2489 0.74 0.557923
Target:  5'- cGCGAUCGCcucgUUCGCGaGCUGgCGGacGAAGCc -3'
miRNA:   3'- -CGUUAGCG----AAGUGC-CGAC-GCU--UUUUG- -5'
27685 3' -47.5 NC_005882.1 + 13092 0.74 0.581699
Target:  5'- uGCGAuUCGaugUCGCGGCUGCGGcggcuGGCg -3'
miRNA:   3'- -CGUU-AGCga-AGUGCCGACGCUuu---UUG- -5'
27685 3' -47.5 NC_005882.1 + 31461 0.74 0.593668
Target:  5'- cGCAgcGUCGuCUUCGCGGgCUGCGcc-GGCa -3'
miRNA:   3'- -CGU--UAGC-GAAGUGCC-GACGCuuuUUG- -5'
27685 3' -47.5 NC_005882.1 + 15222 0.72 0.689784
Target:  5'- cCAAUCGCggCAuuCGGCUGCGcggauguggucgGGAAGCa -3'
miRNA:   3'- cGUUAGCGaaGU--GCCGACGC------------UUUUUG- -5'
27685 3' -47.5 NC_005882.1 + 11677 0.72 0.689784
Target:  5'- gGCAGUUGCU--GCGGCga-GAAAAGCg -3'
miRNA:   3'- -CGUUAGCGAagUGCCGacgCUUUUUG- -5'
27685 3' -47.5 NC_005882.1 + 11511 0.71 0.736685
Target:  5'- aGCGGUCgGCUUgCGCGGCguuccUGCGAuucAGACc -3'
miRNA:   3'- -CGUUAG-CGAA-GUGCCG-----ACGCUu--UUUG- -5'
27685 3' -47.5 NC_005882.1 + 17181 0.71 0.759438
Target:  5'- cGCAAUcCGCUUUaaaaGCGGC-GCGAccAGCg -3'
miRNA:   3'- -CGUUA-GCGAAG----UGCCGaCGCUuuUUG- -5'
27685 3' -47.5 NC_005882.1 + 10954 0.7 0.781567
Target:  5'- cGCAugCGCccgCGCGcGCUGCGAcGAACc -3'
miRNA:   3'- -CGUuaGCGaa-GUGC-CGACGCUuUUUG- -5'
27685 3' -47.5 NC_005882.1 + 26323 0.7 0.792359
Target:  5'- cGCAcagaaguucAUCGCUUCgcGCGGCgacGCGuucauGAAGCa -3'
miRNA:   3'- -CGU---------UAGCGAAG--UGCCGa--CGCu----UUUUG- -5'
27685 3' -47.5 NC_005882.1 + 12319 0.69 0.852431
Target:  5'- cGCGAUCaGCgcgUgACGGCUGCcGGcgGCg -3'
miRNA:   3'- -CGUUAG-CGa--AgUGCCGACGcUUuuUG- -5'
27685 3' -47.5 NC_005882.1 + 18396 0.69 0.861543
Target:  5'- uGCGA-CGCgaCGCGGCcGCGGucAGCu -3'
miRNA:   3'- -CGUUaGCGaaGUGCCGaCGCUuuUUG- -5'
27685 3' -47.5 NC_005882.1 + 2444 0.68 0.878896
Target:  5'- gGCGAUCGCgcUCACGGU--CGAucGGCu -3'
miRNA:   3'- -CGUUAGCGa-AGUGCCGacGCUuuUUG- -5'
27685 3' -47.5 NC_005882.1 + 1886 0.68 0.878896
Target:  5'- cGCGAgaCGC-UCGCGGCcaGCGAAAGu- -3'
miRNA:   3'- -CGUUa-GCGaAGUGCCGa-CGCUUUUug -5'
27685 3' -47.5 NC_005882.1 + 11554 0.68 0.887119
Target:  5'- uCAAgCGCUUCccGCGGCUGaCGAGcuGGCu -3'
miRNA:   3'- cGUUaGCGAAG--UGCCGAC-GCUUu-UUG- -5'
27685 3' -47.5 NC_005882.1 + 12517 0.68 0.908464
Target:  5'- uGCuuUCGCgcggccagugugUCGCGGCgGCGGccGGCg -3'
miRNA:   3'- -CGuuAGCGa-----------AGUGCCGaCGCUuuUUG- -5'
27685 3' -47.5 NC_005882.1 + 20496 0.68 0.909892
Target:  5'- -gGAUCGCUgC-CGGCcGCGguGAACu -3'
miRNA:   3'- cgUUAGCGAaGuGCCGaCGCuuUUUG- -5'
27685 3' -47.5 NC_005882.1 + 18526 0.68 0.909892
Target:  5'- cGUggUUGCccgUUACGGCUgaugGCGAGcuGCa -3'
miRNA:   3'- -CGuuAGCGa--AGUGCCGA----CGCUUuuUG- -5'
27685 3' -47.5 NC_005882.1 + 25228 0.68 0.912708
Target:  5'- gGCAAUCGCgaUCACGGuguagguaaugccuuCgGCGAugGACu -3'
miRNA:   3'- -CGUUAGCGa-AGUGCC---------------GaCGCUuuUUG- -5'
27685 3' -47.5 NC_005882.1 + 14513 0.67 0.916834
Target:  5'- uGCcg-CGCUggcUGGCUGCGAGcAACg -3'
miRNA:   3'- -CGuuaGCGAaguGCCGACGCUUuUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.