miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27685 3' -47.5 NC_005882.1 + 27409 1.15 0.001561
Target:  5'- cGCAAUCGCUUCACGGCUGCGAAAAACa -3'
miRNA:   3'- -CGUUAGCGAAGUGCCGACGCUUUUUG- -5'
27685 3' -47.5 NC_005882.1 + 10990 0.66 0.96053
Target:  5'- gGCGGUgCGCagcgaACGGCUGaCGAucGAGGCc -3'
miRNA:   3'- -CGUUA-GCGaag--UGCCGAC-GCU--UUUUG- -5'
27685 3' -47.5 NC_005882.1 + 26743 0.66 0.951549
Target:  5'- cGUggUCgGCUUCgcaACGGCcGUGAucGGCa -3'
miRNA:   3'- -CGuuAG-CGAAG---UGCCGaCGCUuuUUG- -5'
27685 3' -47.5 NC_005882.1 + 14103 0.66 0.951549
Target:  5'- gGCGAaCGUaUCGCgcugcuguccaaGGCcGCGAAGAACa -3'
miRNA:   3'- -CGUUaGCGaAGUG------------CCGaCGCUUUUUG- -5'
27685 3' -47.5 NC_005882.1 + 8152 0.66 0.946583
Target:  5'- gGCcGUCGCgUCGCGGCcgGuCGGGAu-- -3'
miRNA:   3'- -CGuUAGCGaAGUGCCGa-C-GCUUUuug -5'
27685 3' -47.5 NC_005882.1 + 28004 0.66 0.946583
Target:  5'- cGCuGUCGUUUCACuacuGGUauUGCGAuccgGAAGCc -3'
miRNA:   3'- -CGuUAGCGAAGUG----CCG--ACGCU----UUUUG- -5'
27685 3' -47.5 NC_005882.1 + 19664 0.66 0.940745
Target:  5'- uGCAGUCGUcgcauuucucgacUUCACGGCacGUGAGc--- -3'
miRNA:   3'- -CGUUAGCG-------------AAGUGCCGa-CGCUUuuug -5'
27685 3' -47.5 NC_005882.1 + 10829 0.67 0.929725
Target:  5'- gGCGGUCGCgcUCGucGCUGCGggGcucguGACg -3'
miRNA:   3'- -CGUUAGCGa-AGUgcCGACGCuuU-----UUG- -5'
27685 3' -47.5 NC_005882.1 + 295 0.67 0.923445
Target:  5'- gGCAuuacAUCG----ACGGCUGCGGAGAAg -3'
miRNA:   3'- -CGU----UAGCgaagUGCCGACGCUUUUUg -5'
27685 3' -47.5 NC_005882.1 + 25228 0.68 0.912708
Target:  5'- gGCAAUCGCgaUCACGGuguagguaaugccuuCgGCGAugGACu -3'
miRNA:   3'- -CGUUAGCGa-AGUGCC---------------GaCGCUuuUUG- -5'
27685 3' -47.5 NC_005882.1 + 26323 0.7 0.792359
Target:  5'- cGCAcagaaguucAUCGCUUCgcGCGGCgacGCGuucauGAAGCa -3'
miRNA:   3'- -CGU---------UAGCGAAG--UGCCGa--CGCu----UUUUG- -5'
27685 3' -47.5 NC_005882.1 + 12319 0.69 0.852431
Target:  5'- cGCGAUCaGCgcgUgACGGCUGCcGGcgGCg -3'
miRNA:   3'- -CGUUAG-CGa--AgUGCCGACGcUUuuUG- -5'
27685 3' -47.5 NC_005882.1 + 2444 0.68 0.878896
Target:  5'- gGCGAUCGCgcUCACGGU--CGAucGGCu -3'
miRNA:   3'- -CGUUAGCGa-AGUGCCGacGCUuuUUG- -5'
27685 3' -47.5 NC_005882.1 + 1886 0.68 0.878896
Target:  5'- cGCGAgaCGC-UCGCGGCcaGCGAAAGu- -3'
miRNA:   3'- -CGUUa-GCGaAGUGCCGa-CGCUUUUug -5'
27685 3' -47.5 NC_005882.1 + 11554 0.68 0.887119
Target:  5'- uCAAgCGCUUCccGCGGCUGaCGAGcuGGCu -3'
miRNA:   3'- cGUUaGCGAAG--UGCCGAC-GCUUu-UUG- -5'
27685 3' -47.5 NC_005882.1 + 12517 0.68 0.908464
Target:  5'- uGCuuUCGCgcggccagugugUCGCGGCgGCGGccGGCg -3'
miRNA:   3'- -CGuuAGCGa-----------AGUGCCGaCGCUuuUUG- -5'
27685 3' -47.5 NC_005882.1 + 18526 0.68 0.909892
Target:  5'- cGUggUUGCccgUUACGGCUgaugGCGAGcuGCa -3'
miRNA:   3'- -CGuuAGCGa--AGUGCCGA----CGCUUuuUG- -5'
27685 3' -47.5 NC_005882.1 + 19788 0.66 0.956196
Target:  5'- cGgAAUCGCUcgccaGCGGCUGCuu--GGCa -3'
miRNA:   3'- -CgUUAGCGAag---UGCCGACGcuuuUUG- -5'
27685 3' -47.5 NC_005882.1 + 13092 0.74 0.581699
Target:  5'- uGCGAuUCGaugUCGCGGCUGCGGcggcuGGCg -3'
miRNA:   3'- -CGUU-AGCga-AGUGCCGACGCUuu---UUG- -5'
27685 3' -47.5 NC_005882.1 + 31461 0.74 0.593668
Target:  5'- cGCAgcGUCGuCUUCGCGGgCUGCGcc-GGCa -3'
miRNA:   3'- -CGU--UAGC-GAAGUGCC-GACGCuuuUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.