Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27685 | 3' | -47.5 | NC_005882.1 | + | 295 | 0.67 | 0.923445 |
Target: 5'- gGCAuuacAUCG----ACGGCUGCGGAGAAg -3' miRNA: 3'- -CGU----UAGCgaagUGCCGACGCUUUUUg -5' |
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27685 | 3' | -47.5 | NC_005882.1 | + | 967 | 0.67 | 0.936251 |
Target: 5'- aGCAAUCGaagaugaUUCGCGGCaucuggcuugagcugGCGGAucgGGGCg -3' miRNA: 3'- -CGUUAGCg------AAGUGCCGa--------------CGCUU---UUUG- -5' |
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27685 | 3' | -47.5 | NC_005882.1 | + | 1631 | 0.66 | 0.951549 |
Target: 5'- aGUAAUCGUcgagcugCGCGGCgacgcccgaUGCGAugGGCg -3' miRNA: 3'- -CGUUAGCGaa-----GUGCCG---------ACGCUuuUUG- -5' |
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27685 | 3' | -47.5 | NC_005882.1 | + | 1886 | 0.68 | 0.878896 |
Target: 5'- cGCGAgaCGC-UCGCGGCcaGCGAAAGu- -3' miRNA: 3'- -CGUUa-GCGaAGUGCCGa-CGCUUUUug -5' |
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27685 | 3' | -47.5 | NC_005882.1 | + | 2190 | 0.67 | 0.916834 |
Target: 5'- gGCGAUCGUcaCGCaGGCguuUGCGAccGACa -3' miRNA: 3'- -CGUUAGCGaaGUG-CCG---ACGCUuuUUG- -5' |
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27685 | 3' | -47.5 | NC_005882.1 | + | 2444 | 0.68 | 0.878896 |
Target: 5'- gGCGAUCGCgcUCACGGU--CGAucGGCu -3' miRNA: 3'- -CGUUAGCGa-AGUGCCGacGCUuuUUG- -5' |
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27685 | 3' | -47.5 | NC_005882.1 | + | 2489 | 0.74 | 0.557923 |
Target: 5'- cGCGAUCGCcucgUUCGCGaGCUGgCGGacGAAGCc -3' miRNA: 3'- -CGUUAGCG----AAGUGC-CGAC-GCU--UUUUG- -5' |
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27685 | 3' | -47.5 | NC_005882.1 | + | 8152 | 0.66 | 0.946583 |
Target: 5'- gGCcGUCGCgUCGCGGCcgGuCGGGAu-- -3' miRNA: 3'- -CGuUAGCGaAGUGCCGa-C-GCUUUuug -5' |
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27685 | 3' | -47.5 | NC_005882.1 | + | 10829 | 0.67 | 0.929725 |
Target: 5'- gGCGGUCGCgcUCGucGCUGCGggGcucguGACg -3' miRNA: 3'- -CGUUAGCGa-AGUgcCGACGCuuU-----UUG- -5' |
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27685 | 3' | -47.5 | NC_005882.1 | + | 10954 | 0.7 | 0.781567 |
Target: 5'- cGCAugCGCccgCGCGcGCUGCGAcGAACc -3' miRNA: 3'- -CGUuaGCGaa-GUGC-CGACGCUuUUUG- -5' |
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27685 | 3' | -47.5 | NC_005882.1 | + | 10990 | 0.66 | 0.96053 |
Target: 5'- gGCGGUgCGCagcgaACGGCUGaCGAucGAGGCc -3' miRNA: 3'- -CGUUA-GCGaag--UGCCGAC-GCU--UUUUG- -5' |
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27685 | 3' | -47.5 | NC_005882.1 | + | 11511 | 0.71 | 0.736685 |
Target: 5'- aGCGGUCgGCUUgCGCGGCguuccUGCGAuucAGACc -3' miRNA: 3'- -CGUUAG-CGAA-GUGCCG-----ACGCUu--UUUG- -5' |
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27685 | 3' | -47.5 | NC_005882.1 | + | 11554 | 0.68 | 0.887119 |
Target: 5'- uCAAgCGCUUCccGCGGCUGaCGAGcuGGCu -3' miRNA: 3'- cGUUaGCGAAG--UGCCGAC-GCUUu-UUG- -5' |
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27685 | 3' | -47.5 | NC_005882.1 | + | 11677 | 0.72 | 0.689784 |
Target: 5'- gGCAGUUGCU--GCGGCga-GAAAAGCg -3' miRNA: 3'- -CGUUAGCGAagUGCCGacgCUUUUUG- -5' |
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27685 | 3' | -47.5 | NC_005882.1 | + | 12319 | 0.69 | 0.852431 |
Target: 5'- cGCGAUCaGCgcgUgACGGCUGCcGGcgGCg -3' miRNA: 3'- -CGUUAG-CGa--AgUGCCGACGcUUuuUG- -5' |
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27685 | 3' | -47.5 | NC_005882.1 | + | 12517 | 0.68 | 0.908464 |
Target: 5'- uGCuuUCGCgcggccagugugUCGCGGCgGCGGccGGCg -3' miRNA: 3'- -CGuuAGCGa-----------AGUGCCGaCGCUuuUUG- -5' |
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27685 | 3' | -47.5 | NC_005882.1 | + | 13092 | 0.74 | 0.581699 |
Target: 5'- uGCGAuUCGaugUCGCGGCUGCGGcggcuGGCg -3' miRNA: 3'- -CGUU-AGCga-AGUGCCGACGCUuu---UUG- -5' |
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27685 | 3' | -47.5 | NC_005882.1 | + | 14103 | 0.66 | 0.951549 |
Target: 5'- gGCGAaCGUaUCGCgcugcuguccaaGGCcGCGAAGAACa -3' miRNA: 3'- -CGUUaGCGaAGUG------------CCGaCGCUUUUUG- -5' |
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27685 | 3' | -47.5 | NC_005882.1 | + | 14122 | 0.67 | 0.916834 |
Target: 5'- uCGGUCGCUUCcuGCaGGUUGaCGAugGACu -3' miRNA: 3'- cGUUAGCGAAG--UG-CCGAC-GCUuuUUG- -5' |
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27685 | 3' | -47.5 | NC_005882.1 | + | 14513 | 0.67 | 0.916834 |
Target: 5'- uGCcg-CGCUggcUGGCUGCGAGcAACg -3' miRNA: 3'- -CGuuaGCGAaguGCCGACGCUUuUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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