miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27687 3' -55.4 NC_005882.1 + 27924 1.03 0.001807
Target:  5'- cCGACUACGCCGAACACGCGC-GCUGCa -3'
miRNA:   3'- -GCUGAUGCGGCUUGUGCGCGaCGACG- -5'
27687 3' -55.4 NC_005882.1 + 18130 0.88 0.021467
Target:  5'- aCGACUcgGCGCUGcGCACGCGCUuGCUGCa -3'
miRNA:   3'- -GCUGA--UGCGGCuUGUGCGCGA-CGACG- -5'
27687 3' -55.4 NC_005882.1 + 21163 0.83 0.049937
Target:  5'- uCGGCaACGCCGAGCGCcuucGCGCcgGCUGCg -3'
miRNA:   3'- -GCUGaUGCGGCUUGUG----CGCGa-CGACG- -5'
27687 3' -55.4 NC_005882.1 + 29171 0.83 0.049937
Target:  5'- uCGGCUACGCCG-GCGCGcCGUUGCUcGCg -3'
miRNA:   3'- -GCUGAUGCGGCuUGUGC-GCGACGA-CG- -5'
27687 3' -55.4 NC_005882.1 + 31541 0.8 0.085138
Target:  5'- aGACaGCGCCGucgcucgucucGACACGCGUgccgGCUGCa -3'
miRNA:   3'- gCUGaUGCGGC-----------UUGUGCGCGa---CGACG- -5'
27687 3' -55.4 NC_005882.1 + 14083 0.79 0.101441
Target:  5'- cCGACgaagACGCCGAuccaggcgaACGuauCGCGCUGCUGUc -3'
miRNA:   3'- -GCUGa---UGCGGCU---------UGU---GCGCGACGACG- -5'
27687 3' -55.4 NC_005882.1 + 13610 0.78 0.117234
Target:  5'- gGACUAccuCGCCGAuCGCGUGCUggugaaGCUGCg -3'
miRNA:   3'- gCUGAU---GCGGCUuGUGCGCGA------CGACG- -5'
27687 3' -55.4 NC_005882.1 + 18830 0.77 0.127781
Target:  5'- aCGAUUGCGCCGGcgugAUACGCGCga-UGCa -3'
miRNA:   3'- -GCUGAUGCGGCU----UGUGCGCGacgACG- -5'
27687 3' -55.4 NC_005882.1 + 28736 0.77 0.135293
Target:  5'- aGACUcgGCGCCgcgGAACuuaGCGCGCUGCUcGCc -3'
miRNA:   3'- gCUGA--UGCGG---CUUG---UGCGCGACGA-CG- -5'
27687 3' -55.4 NC_005882.1 + 8351 0.77 0.135293
Target:  5'- aGAUUGCGCCGcuCGCGCGCaUGCUc- -3'
miRNA:   3'- gCUGAUGCGGCuuGUGCGCG-ACGAcg -5'
27687 3' -55.4 NC_005882.1 + 8652 0.75 0.171461
Target:  5'- gGGCUGCGUCGAcggcguacgcuuuucGCAgGCGCUGCgucguuucgGCg -3'
miRNA:   3'- gCUGAUGCGGCU---------------UGUgCGCGACGa--------CG- -5'
27687 3' -55.4 NC_005882.1 + 12778 0.75 0.184299
Target:  5'- cCGGCgaGCGCCGc-CGCGCGCUGCgucuccGCg -3'
miRNA:   3'- -GCUGa-UGCGGCuuGUGCGCGACGa-----CG- -5'
27687 3' -55.4 NC_005882.1 + 28028 0.74 0.194745
Target:  5'- gCGAUccggaaGCCGAGCugGCGaaGCUGCg -3'
miRNA:   3'- -GCUGaug---CGGCUUGugCGCgaCGACG- -5'
27687 3' -55.4 NC_005882.1 + 31290 0.74 0.200161
Target:  5'- uCGAcCUGCGCCGGAUACaGCGUcuUGCcagUGCg -3'
miRNA:   3'- -GCU-GAUGCGGCUUGUG-CGCG--ACG---ACG- -5'
27687 3' -55.4 NC_005882.1 + 13833 0.74 0.205706
Target:  5'- uCGGCagGCGuuGcACGC-CGCUGCUGCg -3'
miRNA:   3'- -GCUGa-UGCggCuUGUGcGCGACGACG- -5'
27687 3' -55.4 NC_005882.1 + 26628 0.74 0.223145
Target:  5'- gGAUcACgGuuGGcCGCGCGCUGCUGCc -3'
miRNA:   3'- gCUGaUG-CggCUuGUGCGCGACGACG- -5'
27687 3' -55.4 NC_005882.1 + 13714 0.72 0.261791
Target:  5'- uCGAUUGCgaGCCGGGCAuCGCGCgGCcgGCc -3'
miRNA:   3'- -GCUGAUG--CGGCUUGU-GCGCGaCGa-CG- -5'
27687 3' -55.4 NC_005882.1 + 18909 0.72 0.275833
Target:  5'- uGAUUuCGCCGAAacggaccucgcCGCGacgGCUGCUGCa -3'
miRNA:   3'- gCUGAuGCGGCUU-----------GUGCg--CGACGACG- -5'
27687 3' -55.4 NC_005882.1 + 25614 0.72 0.290471
Target:  5'- gGGCUcgGCGCCGAcaugcucggcacAUACGCGaCggcgGCUGCc -3'
miRNA:   3'- gCUGA--UGCGGCU------------UGUGCGC-Ga---CGACG- -5'
27687 3' -55.4 NC_005882.1 + 27155 0.72 0.298015
Target:  5'- -uGCUG-GCCGGGCGCGCGgUGCUcugGCu -3'
miRNA:   3'- gcUGAUgCGGCUUGUGCGCgACGA---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.