miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27687 3' -55.4 NC_005882.1 + 15981 0.69 0.400289
Target:  5'- gCGAgCUGCGCgCGGACGCGCacgucgGCgGgUGCg -3'
miRNA:   3'- -GCU-GAUGCG-GCUUGUGCG------CGaCgACG- -5'
27687 3' -55.4 NC_005882.1 + 27155 0.72 0.298015
Target:  5'- -uGCUG-GCCGGGCGCGCGgUGCUcugGCu -3'
miRNA:   3'- gcUGAUgCGGCUUGUGCGCgACGA---CG- -5'
27687 3' -55.4 NC_005882.1 + 16608 0.71 0.305711
Target:  5'- aGACcgguaGCGCCGAcgucuACGaGCGcCUGCUGCa -3'
miRNA:   3'- gCUGa----UGCGGCU-----UGUgCGC-GACGACG- -5'
27687 3' -55.4 NC_005882.1 + 8108 0.71 0.305711
Target:  5'- cCGACUgcgGCGuuGAGCGUGCGUUGCaagaucUGCa -3'
miRNA:   3'- -GCUGA---UGCggCUUGUGCGCGACG------ACG- -5'
27687 3' -55.4 NC_005882.1 + 23197 0.71 0.338007
Target:  5'- uCGA-UGCGCCGAucgGCACGaCGCUcGCgcagGCg -3'
miRNA:   3'- -GCUgAUGCGGCU---UGUGC-GCGA-CGa---CG- -5'
27687 3' -55.4 NC_005882.1 + 11973 0.7 0.346459
Target:  5'- uGGCUaccGCGCCGAGCugACGCGCaacGCacgUGCc -3'
miRNA:   3'- gCUGA---UGCGGCUUG--UGCGCGa--CG---ACG- -5'
27687 3' -55.4 NC_005882.1 + 25574 0.7 0.355061
Target:  5'- cCGGCUggcGCGCgGcGC-CGCGCUGCgugaGCa -3'
miRNA:   3'- -GCUGA---UGCGgCuUGuGCGCGACGa---CG- -5'
27687 3' -55.4 NC_005882.1 + 4762 0.7 0.363813
Target:  5'- gCGG-UACGCCGucCGgauaGCGCUGUUGCa -3'
miRNA:   3'- -GCUgAUGCGGCuuGUg---CGCGACGACG- -5'
27687 3' -55.4 NC_005882.1 + 15097 0.7 0.372713
Target:  5'- uCGGCUgacACGCCGGuGC-UGCGCUGggcCUGCa -3'
miRNA:   3'- -GCUGA---UGCGGCU-UGuGCGCGAC---GACG- -5'
27687 3' -55.4 NC_005882.1 + 25614 0.72 0.290471
Target:  5'- gGGCUcgGCGCCGAcaugcucggcacAUACGCGaCggcgGCUGCc -3'
miRNA:   3'- gCUGA--UGCGGCU------------UGUGCGC-Ga---CGACG- -5'
27687 3' -55.4 NC_005882.1 + 18909 0.72 0.275833
Target:  5'- uGAUUuCGCCGAAacggaccucgcCGCGacgGCUGCUGCa -3'
miRNA:   3'- gCUGAuGCGGCUU-----------GUGCg--CGACGACG- -5'
27687 3' -55.4 NC_005882.1 + 13714 0.72 0.261791
Target:  5'- uCGAUUGCgaGCCGGGCAuCGCGCgGCcgGCc -3'
miRNA:   3'- -GCUGAUG--CGGCUUGU-GCGCGaCGa-CG- -5'
27687 3' -55.4 NC_005882.1 + 18130 0.88 0.021467
Target:  5'- aCGACUcgGCGCUGcGCACGCGCUuGCUGCa -3'
miRNA:   3'- -GCUGA--UGCGGCuUGUGCGCGA-CGACG- -5'
27687 3' -55.4 NC_005882.1 + 29171 0.83 0.049937
Target:  5'- uCGGCUACGCCG-GCGCGcCGUUGCUcGCg -3'
miRNA:   3'- -GCUGAUGCGGCuUGUGC-GCGACGA-CG- -5'
27687 3' -55.4 NC_005882.1 + 14083 0.79 0.101441
Target:  5'- cCGACgaagACGCCGAuccaggcgaACGuauCGCGCUGCUGUc -3'
miRNA:   3'- -GCUGa---UGCGGCU---------UGU---GCGCGACGACG- -5'
27687 3' -55.4 NC_005882.1 + 13610 0.78 0.117234
Target:  5'- gGACUAccuCGCCGAuCGCGUGCUggugaaGCUGCg -3'
miRNA:   3'- gCUGAU---GCGGCUuGUGCGCGA------CGACG- -5'
27687 3' -55.4 NC_005882.1 + 8351 0.77 0.135293
Target:  5'- aGAUUGCGCCGcuCGCGCGCaUGCUc- -3'
miRNA:   3'- gCUGAUGCGGCuuGUGCGCG-ACGAcg -5'
27687 3' -55.4 NC_005882.1 + 8652 0.75 0.171461
Target:  5'- gGGCUGCGUCGAcggcguacgcuuuucGCAgGCGCUGCgucguuucgGCg -3'
miRNA:   3'- gCUGAUGCGGCU---------------UGUgCGCGACGa--------CG- -5'
27687 3' -55.4 NC_005882.1 + 28028 0.74 0.194745
Target:  5'- gCGAUccggaaGCCGAGCugGCGaaGCUGCg -3'
miRNA:   3'- -GCUGaug---CGGCUUGugCGCgaCGACG- -5'
27687 3' -55.4 NC_005882.1 + 26628 0.74 0.223145
Target:  5'- gGAUcACgGuuGGcCGCGCGCUGCUGCc -3'
miRNA:   3'- gCUGaUG-CggCUuGUGCGCGACGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.