miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27687 3' -55.4 NC_005882.1 + 461 0.67 0.522333
Target:  5'- uGAC-ACGCCGAACuucCGUGCcaGCUcgGCa -3'
miRNA:   3'- gCUGaUGCGGCUUGu--GCGCGa-CGA--CG- -5'
27687 3' -55.4 NC_005882.1 + 2125 0.71 0.338007
Target:  5'- -cGCUGCGCCGAuuggACAucaccgaucCGCGCUGgCUGg -3'
miRNA:   3'- gcUGAUGCGGCU----UGU---------GCGCGAC-GACg -5'
27687 3' -55.4 NC_005882.1 + 3617 0.66 0.611066
Target:  5'- gCGAUcgUGCCGAAacggUGuCGCUGCUGUa -3'
miRNA:   3'- -GCUGauGCGGCUUgu--GC-GCGACGACG- -5'
27687 3' -55.4 NC_005882.1 + 3674 0.68 0.47979
Target:  5'- uCGACgcaagcgGCGUCGA---CGCGCUGC-GCa -3'
miRNA:   3'- -GCUGa------UGCGGCUuguGCGCGACGaCG- -5'
27687 3' -55.4 NC_005882.1 + 3940 0.66 0.611066
Target:  5'- uGAUcgACGaaGcGCACGCGCUGCcgaucGCg -3'
miRNA:   3'- gCUGa-UGCggCuUGUGCGCGACGa----CG- -5'
27687 3' -55.4 NC_005882.1 + 4762 0.7 0.363813
Target:  5'- gCGG-UACGCCGucCGgauaGCGCUGUUGCa -3'
miRNA:   3'- -GCUgAUGCGGCuuGUg---CGCGACGACG- -5'
27687 3' -55.4 NC_005882.1 + 5137 0.7 0.363813
Target:  5'- gCGGC-ACGCCGAuACGCcaGCGCaGCaUGCg -3'
miRNA:   3'- -GCUGaUGCGGCU-UGUG--CGCGaCG-ACG- -5'
27687 3' -55.4 NC_005882.1 + 5552 0.66 0.588583
Target:  5'- uCGACga-GCUGAACGCGCuuGCgaaacGCUGg -3'
miRNA:   3'- -GCUGaugCGGCUUGUGCG--CGa----CGACg -5'
27687 3' -55.4 NC_005882.1 + 5788 0.68 0.500863
Target:  5'- -cGCUAUGCagGAGCGCgGCGgggccgacCUGCUGCa -3'
miRNA:   3'- gcUGAUGCGg-CUUGUG-CGC--------GACGACG- -5'
27687 3' -55.4 NC_005882.1 + 6401 0.69 0.409765
Target:  5'- ------gGCCGGccGCGCGCGCUGCcuggGCg -3'
miRNA:   3'- gcugaugCGGCU--UGUGCGCGACGa---CG- -5'
27687 3' -55.4 NC_005882.1 + 6469 0.69 0.42913
Target:  5'- uGGCUGuCGCCcaggcAGCGCGCGCgGCcgGCc -3'
miRNA:   3'- gCUGAU-GCGGc----UUGUGCGCGaCGa-CG- -5'
27687 3' -55.4 NC_005882.1 + 6646 0.68 0.490274
Target:  5'- gCGGC-GCGCCGuGCgucucgGCGUGCUGC-GCc -3'
miRNA:   3'- -GCUGaUGCGGCuUG------UGCGCGACGaCG- -5'
27687 3' -55.4 NC_005882.1 + 6714 0.67 0.55517
Target:  5'- uGGCgcagcACGCCGAgacGCACGgCGC-GCcGCa -3'
miRNA:   3'- gCUGa----UGCGGCU---UGUGC-GCGaCGaCG- -5'
27687 3' -55.4 NC_005882.1 + 7262 0.66 0.577395
Target:  5'- gCGACauUGCGgCGAACAUGCGUcGUagUGUg -3'
miRNA:   3'- -GCUG--AUGCgGCUUGUGCGCGaCG--ACG- -5'
27687 3' -55.4 NC_005882.1 + 7610 0.71 0.329706
Target:  5'- gGAgUGCGCCGAGCACGaaGUcGCaGCa -3'
miRNA:   3'- gCUgAUGCGGCUUGUGCg-CGaCGaCG- -5'
27687 3' -55.4 NC_005882.1 + 8108 0.71 0.305711
Target:  5'- cCGACUgcgGCGuuGAGCGUGCGUUGCaagaucUGCa -3'
miRNA:   3'- -GCUGA---UGCggCUUGUGCGCGACG------ACG- -5'
27687 3' -55.4 NC_005882.1 + 8351 0.77 0.135293
Target:  5'- aGAUUGCGCCGcuCGCGCGCaUGCUc- -3'
miRNA:   3'- gCUGAUGCGGCuuGUGCGCG-ACGAcg -5'
27687 3' -55.4 NC_005882.1 + 8652 0.75 0.171461
Target:  5'- gGGCUGCGUCGAcggcguacgcuuuucGCAgGCGCUGCgucguuucgGCg -3'
miRNA:   3'- gCUGAUGCGGCU---------------UGUgCGCGACGa--------CG- -5'
27687 3' -55.4 NC_005882.1 + 8748 0.68 0.47979
Target:  5'- gCGACgagcaGCGCCGAaacgACGCaGCGcCUGCgaaaaGCg -3'
miRNA:   3'- -GCUGa----UGCGGCU----UGUG-CGC-GACGa----CG- -5'
27687 3' -55.4 NC_005882.1 + 8944 0.68 0.469418
Target:  5'- gCGAaauCUGCGCCGAcccgGCAaaaGCGCUcGCauUGCc -3'
miRNA:   3'- -GCU---GAUGCGGCU----UGUg--CGCGA-CG--ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.