miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27688 5' -49.8 NC_005882.1 + 19060 0.73 0.532445
Target:  5'- gCGAcCCAGCcc-CAcGCCGGCGCGUUg -3'
miRNA:   3'- aGCU-GGUCGuuuGUuUGGCUGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 21200 0.72 0.54385
Target:  5'- gUUGACCGGCGcuuGCucGCCGACAUcggcgGUCg -3'
miRNA:   3'- -AGCUGGUCGUu--UGuuUGGCUGUG-----CAG- -5'
27688 5' -49.8 NC_005882.1 + 13255 0.72 0.566887
Target:  5'- aUCaGCCGGCAGGCGGACaacaCGGCGCGcCu -3'
miRNA:   3'- -AGcUGGUCGUUUGUUUG----GCUGUGCaG- -5'
27688 5' -49.8 NC_005882.1 + 30476 0.72 0.566887
Target:  5'- aCGugCucgGGCAuGCAGACCGugAuCGUCg -3'
miRNA:   3'- aGCugG---UCGUuUGUUUGGCugU-GCAG- -5'
27688 5' -49.8 NC_005882.1 + 19811 0.72 0.566887
Target:  5'- gCGcGCCGGCGugacGACGAcgggcGCCGACACcGUCg -3'
miRNA:   3'- aGC-UGGUCGU----UUGUU-----UGGCUGUG-CAG- -5'
27688 5' -49.8 NC_005882.1 + 18872 0.72 0.578502
Target:  5'- -gGGCaGGCAcGCAGACCGACAUGa- -3'
miRNA:   3'- agCUGgUCGUuUGUUUGGCUGUGCag -5'
27688 5' -49.8 NC_005882.1 + 19422 0.72 0.590166
Target:  5'- cCGACCAGCGcAUucGCCGaACGCGg- -3'
miRNA:   3'- aGCUGGUCGUuUGuuUGGC-UGUGCag -5'
27688 5' -49.8 NC_005882.1 + 33681 0.71 0.601871
Target:  5'- uUCGugCAGCGAGCAGucgguaauuACCGAUcCGcCa -3'
miRNA:   3'- -AGCugGUCGUUUGUU---------UGGCUGuGCaG- -5'
27688 5' -49.8 NC_005882.1 + 18533 0.71 0.601871
Target:  5'- gCGACCGGCuuGCccGCCGaACugGUg -3'
miRNA:   3'- aGCUGGUCGuuUGuuUGGC-UGugCAg -5'
27688 5' -49.8 NC_005882.1 + 8191 0.71 0.608909
Target:  5'- cCGACCGGCGcuugccgccacccAGCGAgugacgaaaucggcACCGcACGCGUCc -3'
miRNA:   3'- aGCUGGUCGU-------------UUGUU--------------UGGC-UGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 20444 0.71 0.625358
Target:  5'- gCGGCCGGC-AGCGAuCCGGuCgGCGUCa -3'
miRNA:   3'- aGCUGGUCGuUUGUUuGGCU-G-UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 12668 0.71 0.625358
Target:  5'- gUCG-CCGGCAAGCGcACCGGCGUGa- -3'
miRNA:   3'- -AGCuGGUCGUUUGUuUGGCUGUGCag -5'
27688 5' -49.8 NC_005882.1 + 20145 0.71 0.635942
Target:  5'- aCGACCGGCAucaGGCucuGGCCGAUgaauucgGCGUUc -3'
miRNA:   3'- aGCUGGUCGU---UUGu--UUGGCUG-------UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 32058 0.71 0.637118
Target:  5'- gUCGACCGGCGucGGCG-AUCGG-ACGUCg -3'
miRNA:   3'- -AGCUGGUCGU--UUGUuUGGCUgUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 35070 0.71 0.648872
Target:  5'- aUCGGCCGGC--ACGAAUgGGCA-GUCg -3'
miRNA:   3'- -AGCUGGUCGuuUGUUUGgCUGUgCAG- -5'
27688 5' -49.8 NC_005882.1 + 10709 0.71 0.648872
Target:  5'- cUCGAuCCGGUAucACAAccGCCGGCGCG-Cg -3'
miRNA:   3'- -AGCU-GGUCGUu-UGUU--UGGCUGUGCaG- -5'
27688 5' -49.8 NC_005882.1 + 13948 0.71 0.648872
Target:  5'- gCGAUCaaGGCGAGCAcggaAGCCGACGCaUCc -3'
miRNA:   3'- aGCUGG--UCGUUUGU----UUGGCUGUGcAG- -5'
27688 5' -49.8 NC_005882.1 + 12367 0.7 0.660609
Target:  5'- uUCGGCCAuGuCGAGCGguucaacgccGGCCGGCACG-Cg -3'
miRNA:   3'- -AGCUGGU-C-GUUUGU----------UUGGCUGUGCaG- -5'
27688 5' -49.8 NC_005882.1 + 17223 0.7 0.660609
Target:  5'- cUCGGCCAGCAu----GCCGAgCAgcuCGUCg -3'
miRNA:   3'- -AGCUGGUCGUuuguuUGGCU-GU---GCAG- -5'
27688 5' -49.8 NC_005882.1 + 31582 0.7 0.660609
Target:  5'- cUGGCCGGC-GACGAG-CGuCACGUCg -3'
miRNA:   3'- aGCUGGUCGuUUGUUUgGCuGUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.