Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27689 | 5' | -67.1 | NC_005882.1 | + | 28265 | 1.07 | 0.000063 |
Target: 5'- uGCCGCCGGCGGCCGCGCAGGCGGUCUc -3' miRNA: 3'- -CGGCGGCCGCCGGCGCGUCCGCCAGA- -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 27639 | 0.81 | 0.008919 |
Target: 5'- cGCCauGCCGGCGGCCGCGCGcGCGG-Cg -3' miRNA: 3'- -CGG--CGGCCGCCGGCGCGUcCGCCaGa -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 18242 | 0.72 | 0.048312 |
Target: 5'- cGCCGCgcaaGGcCGGCCGCGguGGCaGG-Ca -3' miRNA: 3'- -CGGCGg---CC-GCCGGCGCguCCG-CCaGa -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 9499 | 0.72 | 0.049673 |
Target: 5'- gGCgCGCUGGCGGCCGCaagcacgacgcGcCAGGagcaGGUCUu -3' miRNA: 3'- -CG-GCGGCCGCCGGCG-----------C-GUCCg---CCAGA- -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 28038 | 0.72 | 0.049673 |
Target: 5'- aGCCgaGCUGGCGaaGCUGCGCGcGGCGGUg- -3' miRNA: 3'- -CGG--CGGCCGC--CGGCGCGU-CCGCCAga -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 32274 | 0.72 | 0.052508 |
Target: 5'- uUCGCUGGCGGUcagcaCGCGCAGuGCGaGUCc -3' miRNA: 3'- cGGCGGCCGCCG-----GCGCGUC-CGC-CAGa -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 18334 | 0.72 | 0.055501 |
Target: 5'- aGCUGaCC-GCGGCCGCGUcgcgucgcaAGGCcGGUCUg -3' miRNA: 3'- -CGGC-GGcCGCCGGCGCG---------UCCG-CCAGA- -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 27562 | 0.71 | 0.063723 |
Target: 5'- cGCuCGUCGGCGgucGCCGCGCGcGCGGcCg -3' miRNA: 3'- -CG-GCGGCCGC---CGGCGCGUcCGCCaGa -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 28314 | 0.71 | 0.065323 |
Target: 5'- gGCCGCCGGCGGCaccuugggcuguaCG-GCcGGCGG-CUu -3' miRNA: 3'- -CGGCGGCCGCCG-------------GCgCGuCCGCCaGA- -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 21474 | 0.71 | 0.065503 |
Target: 5'- cGgCGCCGGUGcGCCGUaGUcGGUGGUCg -3' miRNA: 3'- -CgGCGGCCGC-CGGCG-CGuCCGCCAGa -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 10414 | 0.71 | 0.067331 |
Target: 5'- aGCCgGCCGGCGauucaGUCGCGCAGGCu---- -3' miRNA: 3'- -CGG-CGGCCGC-----CGGCGCGUCCGccaga -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 26060 | 0.7 | 0.071136 |
Target: 5'- uGCCGCCGuaGGCCGCGCGGuuGa--- -3' miRNA: 3'- -CGGCGGCcgCCGGCGCGUCcgCcaga -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 19857 | 0.7 | 0.073115 |
Target: 5'- -aCGCCGGCGcGCuCGCGCGuGGCGuGcUCg -3' miRNA: 3'- cgGCGGCCGC-CG-GCGCGU-CCGC-C-AGa -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 11932 | 0.7 | 0.073115 |
Target: 5'- cGCCGCCGcgcccGUGGCCGCGCaagugcccgccgAGGCGcuggCUa -3' miRNA: 3'- -CGGCGGC-----CGCCGGCGCG------------UCCGCca--GA- -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 17816 | 0.7 | 0.075147 |
Target: 5'- gGCUGCCGGU-GCCGCGUgguGGCGcuGUCg -3' miRNA: 3'- -CGGCGGCCGcCGGCGCGu--CCGC--CAGa -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 14213 | 0.7 | 0.079375 |
Target: 5'- gGCCGCC-GCGGCCGuCGacaAGGUcGUCa -3' miRNA: 3'- -CGGCGGcCGCCGGC-GCg--UCCGcCAGa -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 12536 | 0.7 | 0.081573 |
Target: 5'- uGUCGCggCGGCGGCCgGCGCugcGGCGaUCg -3' miRNA: 3'- -CGGCG--GCCGCCGG-CGCGu--CCGCcAGa -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 15999 | 0.69 | 0.083829 |
Target: 5'- cGCaCGUCGGCGGgUGCGUgcgccgccgcaAGGCGGcCg -3' miRNA: 3'- -CG-GCGGCCGCCgGCGCG-----------UCCGCCaGa -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 31018 | 0.69 | 0.086144 |
Target: 5'- uCCGCCGGUGggaGCCGCGCuGcGaGGUCg -3' miRNA: 3'- cGGCGGCCGC---CGGCGCGuC-CgCCAGa -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 22478 | 0.69 | 0.088521 |
Target: 5'- gGCaCGCUGG-GG-CGCGCGGGCuuGGUCg -3' miRNA: 3'- -CG-GCGGCCgCCgGCGCGUCCG--CCAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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