Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27689 | 5' | -67.1 | NC_005882.1 | + | 4050 | 0.69 | 0.09096 |
Target: 5'- gGCCGCC-GUGGCCcCGCuGGagaaGGUCa -3' miRNA: 3'- -CGGCGGcCGCCGGcGCGuCCg---CCAGa -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 5426 | 0.68 | 0.112887 |
Target: 5'- cGCCGUCGaucgauGUGuGCCGCGaauuGGCGGUUg -3' miRNA: 3'- -CGGCGGC------CGC-CGGCGCgu--CCGCCAGa -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 6652 | 0.67 | 0.119097 |
Target: 5'- cGCCGUgcgucuCGGCGuGCUGCGCcaagguuucgaAGGCGG-Ca -3' miRNA: 3'- -CGGCG------GCCGC-CGGCGCG-----------UCCGCCaGa -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 9499 | 0.72 | 0.049673 |
Target: 5'- gGCgCGCUGGCGGCCGCaagcacgacgcGcCAGGagcaGGUCUu -3' miRNA: 3'- -CG-GCGGCCGCCGGCG-----------C-GUCCg---CCAGA- -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 10414 | 0.71 | 0.067331 |
Target: 5'- aGCCgGCCGGCGauucaGUCGCGCAGGCu---- -3' miRNA: 3'- -CGG-CGGCCGC-----CGGCGCGUCCGccaga -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 11932 | 0.7 | 0.073115 |
Target: 5'- cGCCGCCGcgcccGUGGCCGCGCaagugcccgccgAGGCGcuggCUa -3' miRNA: 3'- -CGGCGGC-----CGCCGGCGCG------------UCCGCca--GA- -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 12064 | 0.67 | 0.127985 |
Target: 5'- aGCCGCUGGCGcgcggacgccgucaGCgucguuggugCGCGCGGGauGUCUc -3' miRNA: 3'- -CGGCGGCCGC--------------CG----------GCGCGUCCgcCAGA- -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 12536 | 0.7 | 0.081573 |
Target: 5'- uGUCGCggCGGCGGCCgGCGCugcGGCGaUCg -3' miRNA: 3'- -CGGCG--GCCGCCGG-CGCGu--CCGCcAGa -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 12584 | 0.66 | 0.167349 |
Target: 5'- cGCCGCCGcGacacacuGGCCGCGCgaaagcaGGGCaGGa-- -3' miRNA: 3'- -CGGCGGC-Cg------CCGGCGCG-------UCCG-CCaga -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 12783 | 0.68 | 0.106981 |
Target: 5'- gGUCGCCGGCGagcgccGCCGCGCGcuGCG-UCUc -3' miRNA: 3'- -CGGCGGCCGC------CGGCGCGUc-CGCcAGA- -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 12950 | 0.68 | 0.104138 |
Target: 5'- cGgCGCCGGCGGCgGCGUuccacacGCGGa-- -3' miRNA: 3'- -CgGCGGCCGCCGgCGCGuc-----CGCCaga -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 14213 | 0.7 | 0.079375 |
Target: 5'- gGCCGCC-GCGGCCGuCGacaAGGUcGUCa -3' miRNA: 3'- -CGGCGGcCGCCGGC-GCg--UCCGcCAGa -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 14261 | 0.68 | 0.111982 |
Target: 5'- gGCCG-CGGCGGCCGCuuccgcGCgugccugcaccuccAGGCGGa-- -3' miRNA: 3'- -CGGCgGCCGCCGGCG------CG--------------UCCGCCaga -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 15041 | 0.67 | 0.122319 |
Target: 5'- uGCCGaagaaCaGCGGCgGCGCAuGGCuGUCg -3' miRNA: 3'- -CGGCg----GcCGCCGgCGCGU-CCGcCAGa -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 15999 | 0.69 | 0.083829 |
Target: 5'- cGCaCGUCGGCGGgUGCGUgcgccgccgcaAGGCGGcCg -3' miRNA: 3'- -CG-GCGGCCGCCgGCGCG-----------UCCGCCaGa -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 16072 | 0.66 | 0.167349 |
Target: 5'- gGCCGCCuuGCGGCgGCGCAcgcacccgccgacGuGCGcGUCc -3' miRNA: 3'- -CGGCGGc-CGCCGgCGCGU-------------C-CGC-CAGa -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 16314 | 0.66 | 0.158858 |
Target: 5'- aGCUGCCGGCacgcaaguuccugGuGCCGCGCcaggAGGCGa--- -3' miRNA: 3'- -CGGCGGCCG-------------C-CGGCGCG----UCCGCcaga -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 17816 | 0.7 | 0.075147 |
Target: 5'- gGCUGCCGGU-GCCGCGUgguGGCGcuGUCg -3' miRNA: 3'- -CGGCGGCCGcCGGCGCGu--CCGC--CAGa -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 18242 | 0.72 | 0.048312 |
Target: 5'- cGCCGCgcaaGGcCGGCCGCGguGGCaGG-Ca -3' miRNA: 3'- -CGGCGg---CC-GCCGGCGCguCCG-CCaGa -5' |
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27689 | 5' | -67.1 | NC_005882.1 | + | 18334 | 0.72 | 0.055501 |
Target: 5'- aGCUGaCC-GCGGCCGCGUcgcgucgcaAGGCcGGUCUg -3' miRNA: 3'- -CGGC-GGcCGCCGGCGCG---------UCCG-CCAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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