miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27689 5' -67.1 NC_005882.1 + 16314 0.66 0.158858
Target:  5'- aGCUGCCGGCacgcaaguuccugGuGCCGCGCcaggAGGCGa--- -3'
miRNA:   3'- -CGGCGGCCG-------------C-CGGCGCG----UCCGCcaga -5'
27689 5' -67.1 NC_005882.1 + 31018 0.69 0.086144
Target:  5'- uCCGCCGGUGggaGCCGCGCuGcGaGGUCg -3'
miRNA:   3'- cGGCGGCCGC---CGGCGCGuC-CgCCAGa -5'
27689 5' -67.1 NC_005882.1 + 6652 0.67 0.119097
Target:  5'- cGCCGUgcgucuCGGCGuGCUGCGCcaagguuucgaAGGCGG-Ca -3'
miRNA:   3'- -CGGCG------GCCGC-CGGCGCG-----------UCCGCCaGa -5'
27689 5' -67.1 NC_005882.1 + 15041 0.67 0.122319
Target:  5'- uGCCGaagaaCaGCGGCgGCGCAuGGCuGUCg -3'
miRNA:   3'- -CGGCg----GcCGCCGgCGCGU-CCGcCAGa -5'
27689 5' -67.1 NC_005882.1 + 12064 0.67 0.127985
Target:  5'- aGCCGCUGGCGcgcggacgccgucaGCgucguuggugCGCGCGGGauGUCUc -3'
miRNA:   3'- -CGGCGGCCGC--------------CG----------GCGCGUCCgcCAGA- -5'
27689 5' -67.1 NC_005882.1 + 27110 0.67 0.12901
Target:  5'- uGCUGCUGGC--CCGCGUccuGGGCGGcCa -3'
miRNA:   3'- -CGGCGGCCGccGGCGCG---UCCGCCaGa -5'
27689 5' -67.1 NC_005882.1 + 19922 0.67 0.13968
Target:  5'- gGUCGauuacgCGGCGGCCGCGaacGCGGUg- -3'
miRNA:   3'- -CGGCg-----GCCGCCGGCGCgucCGCCAga -5'
27689 5' -67.1 NC_005882.1 + 32971 0.66 0.155166
Target:  5'- aGCaGCuCGGCGGCCGCacGCgcuaccugaAGGCgcaGGUCg -3'
miRNA:   3'- -CGgCG-GCCGCCGGCG--CG---------UCCG---CCAGa -5'
27689 5' -67.1 NC_005882.1 + 29177 0.66 0.155166
Target:  5'- -aCGCCGGCGcGCCGUugcucGCGuGCGGcCg -3'
miRNA:   3'- cgGCGGCCGC-CGGCG-----CGUcCGCCaGa -5'
27689 5' -67.1 NC_005882.1 + 15999 0.69 0.083829
Target:  5'- cGCaCGUCGGCGGgUGCGUgcgccgccgcaAGGCGGcCg -3'
miRNA:   3'- -CG-GCGGCCGCCgGCGCG-----------UCCGCCaGa -5'
27689 5' -67.1 NC_005882.1 + 12536 0.7 0.081573
Target:  5'- uGUCGCggCGGCGGCCgGCGCugcGGCGaUCg -3'
miRNA:   3'- -CGGCG--GCCGCCGG-CGCGu--CCGCcAGa -5'
27689 5' -67.1 NC_005882.1 + 14213 0.7 0.079375
Target:  5'- gGCCGCC-GCGGCCGuCGacaAGGUcGUCa -3'
miRNA:   3'- -CGGCGGcCGCCGGC-GCg--UCCGcCAGa -5'
27689 5' -67.1 NC_005882.1 + 18242 0.72 0.048312
Target:  5'- cGCCGCgcaaGGcCGGCCGCGguGGCaGG-Ca -3'
miRNA:   3'- -CGGCGg---CC-GCCGGCGCguCCG-CCaGa -5'
27689 5' -67.1 NC_005882.1 + 9499 0.72 0.049673
Target:  5'- gGCgCGCUGGCGGCCGCaagcacgacgcGcCAGGagcaGGUCUu -3'
miRNA:   3'- -CG-GCGGCCGCCGGCG-----------C-GUCCg---CCAGA- -5'
27689 5' -67.1 NC_005882.1 + 28038 0.72 0.049673
Target:  5'- aGCCgaGCUGGCGaaGCUGCGCGcGGCGGUg- -3'
miRNA:   3'- -CGG--CGGCCGC--CGGCGCGU-CCGCCAga -5'
27689 5' -67.1 NC_005882.1 + 18334 0.72 0.055501
Target:  5'- aGCUGaCC-GCGGCCGCGUcgcgucgcaAGGCcGGUCUg -3'
miRNA:   3'- -CGGC-GGcCGCCGGCGCG---------UCCG-CCAGA- -5'
27689 5' -67.1 NC_005882.1 + 27562 0.71 0.063723
Target:  5'- cGCuCGUCGGCGgucGCCGCGCGcGCGGcCg -3'
miRNA:   3'- -CG-GCGGCCGC---CGGCGCGUcCGCCaGa -5'
27689 5' -67.1 NC_005882.1 + 10414 0.71 0.067331
Target:  5'- aGCCgGCCGGCGauucaGUCGCGCAGGCu---- -3'
miRNA:   3'- -CGG-CGGCCGC-----CGGCGCGUCCGccaga -5'
27689 5' -67.1 NC_005882.1 + 11932 0.7 0.073115
Target:  5'- cGCCGCCGcgcccGUGGCCGCGCaagugcccgccgAGGCGcuggCUa -3'
miRNA:   3'- -CGGCGGC-----CGCCGGCGCG------------UCCGCca--GA- -5'
27689 5' -67.1 NC_005882.1 + 17816 0.7 0.075147
Target:  5'- gGCUGCCGGU-GCCGCGUgguGGCGcuGUCg -3'
miRNA:   3'- -CGGCGGCCGcCGGCGCGu--CCGC--CAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.