Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27699 | 3' | -59.2 | NC_005882.1 | + | 31402 | 1.04 | 0.000471 |
Target: 5'- gCAGCCCGCGAAGACGACGCUGCGCUUc -3' miRNA: 3'- -GUCGGGCGCUUCUGCUGCGACGCGAA- -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 30621 | 0.74 | 0.092118 |
Target: 5'- uGGCCggaucggGCGgcGAUGGCGCUGCGCUg -3' miRNA: 3'- gUCGGg------CGCuuCUGCUGCGACGCGAa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 13889 | 0.72 | 0.133691 |
Target: 5'- aUAGCCCGUGAAGuugcccuCGACGagcGCGCUUu -3' miRNA: 3'- -GUCGGGCGCUUCu------GCUGCga-CGCGAA- -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 25962 | 0.72 | 0.133691 |
Target: 5'- -cGCUCGgGAucaaGGGCGACGCgGCGCUg -3' miRNA: 3'- guCGGGCgCU----UCUGCUGCGaCGCGAa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 19264 | 0.71 | 0.153874 |
Target: 5'- aGGCCCuuGAGGGcCGGCgGCUGCGCa- -3' miRNA: 3'- gUCGGGcgCUUCU-GCUG-CGACGCGaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 22469 | 0.7 | 0.186254 |
Target: 5'- gGGCgCGCGGGcuuggucGACGGCGCUGCGg-- -3' miRNA: 3'- gUCGgGCGCUU-------CUGCUGCGACGCgaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 14127 | 0.7 | 0.191941 |
Target: 5'- aAGgCCGCGAAGaacaucGCGACGCUggcccGCGCg- -3' miRNA: 3'- gUCgGGCGCUUC------UGCUGCGA-----CGCGaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 27812 | 0.7 | 0.191941 |
Target: 5'- -uGCUCGCGAAGcGCGAgCGCcGCGCg- -3' miRNA: 3'- guCGGGCGCUUC-UGCU-GCGaCGCGaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 26706 | 0.7 | 0.197242 |
Target: 5'- aGGUCCGUGAGcGACGGCaGCaGCGCg- -3' miRNA: 3'- gUCGGGCGCUU-CUGCUG-CGaCGCGaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 26858 | 0.69 | 0.213343 |
Target: 5'- aCGGUCgggGCGAAGugGACGCUguuucgcGCGCUc -3' miRNA: 3'- -GUCGGg--CGCUUCugCUGCGA-------CGCGAa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 15533 | 0.69 | 0.213918 |
Target: 5'- -cGCCCGUGAAGGCGGCGUU-CGa-- -3' miRNA: 3'- guCGGGCGCUUCUGCUGCGAcGCgaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 30067 | 0.69 | 0.219739 |
Target: 5'- aCGGCgucaCCGCGaAAGGCGACGUcgGCGUUg -3' miRNA: 3'- -GUCG----GGCGC-UUCUGCUGCGa-CGCGAa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 4208 | 0.69 | 0.23802 |
Target: 5'- uCGGgCgGCGGcaAGACGACGCugaUGCGCg- -3' miRNA: 3'- -GUCgGgCGCU--UCUGCUGCG---ACGCGaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 24540 | 0.69 | 0.24439 |
Target: 5'- aGGCCCGcCGAagcgggccaAGACGACaacgaCUGCGCa- -3' miRNA: 3'- gUCGGGC-GCU---------UCUGCUGc----GACGCGaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 2429 | 0.68 | 0.250902 |
Target: 5'- cCAGCUCGCGA--ACGAgGCgaucGCGCUc -3' miRNA: 3'- -GUCGGGCGCUucUGCUgCGa---CGCGAa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 4764 | 0.68 | 0.250902 |
Target: 5'- cCGGCCCGCGA--GCGGgucaacagcaacCGCUGCaGCUc -3' miRNA: 3'- -GUCGGGCGCUucUGCU------------GCGACG-CGAa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 13334 | 0.68 | 0.257556 |
Target: 5'- -uGCgCCGCGAAGACuACG-UGCGCa- -3' miRNA: 3'- guCG-GGCGCUUCUGcUGCgACGCGaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 23286 | 0.68 | 0.257556 |
Target: 5'- cCGGCCCGCGcccGGCcaGCGCcUGCGCg- -3' miRNA: 3'- -GUCGGGCGCuu-CUGc-UGCG-ACGCGaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 3295 | 0.68 | 0.263667 |
Target: 5'- uCGGCCCguaccucGCGAAGucgucCGACguGCUGCGCg- -3' miRNA: 3'- -GUCGGG-------CGCUUCu----GCUG--CGACGCGaa -5' |
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27699 | 3' | -59.2 | NC_005882.1 | + | 25408 | 0.68 | 0.264353 |
Target: 5'- uCGGCCgCGuCGccGACGA-GCUGCGCg- -3' miRNA: 3'- -GUCGG-GC-GCuuCUGCUgCGACGCGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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