miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27700 5' -54.6 NC_005882.1 + 32350 1.08 0.000781
Target:  5'- gGCCGAGCGCCUCGACAACAUCGACAUg -3'
miRNA:   3'- -CGGCUCGCGGAGCUGUUGUAGCUGUA- -5'
27700 5' -54.6 NC_005882.1 + 7744 0.81 0.078761
Target:  5'- -gCGAGCGCCUCGACAGCAUucaaacccgccUGACGa -3'
miRNA:   3'- cgGCUCGCGGAGCUGUUGUA-----------GCUGUa -5'
27700 5' -54.6 NC_005882.1 + 24045 0.8 0.083587
Target:  5'- gGCCGAGCacaagGCgCUCGGCAugAUCGGCAa -3'
miRNA:   3'- -CGGCUCG-----CG-GAGCUGUugUAGCUGUa -5'
27700 5' -54.6 NC_005882.1 + 4588 0.78 0.118971
Target:  5'- gGCCGcGCaGCCUCGACGACcUCGACc- -3'
miRNA:   3'- -CGGCuCG-CGGAGCUGUUGuAGCUGua -5'
27700 5' -54.6 NC_005882.1 + 34634 0.76 0.172709
Target:  5'- cGCCGAGCGCCgucUCGACAACgAUCu-CAUc -3'
miRNA:   3'- -CGGCUCGCGG---AGCUGUUG-UAGcuGUA- -5'
27700 5' -54.6 NC_005882.1 + 31627 0.74 0.234116
Target:  5'- cGUCGA-CGaCCUgGGCGACGUCGACGUg -3'
miRNA:   3'- -CGGCUcGC-GGAgCUGUUGUAGCUGUA- -5'
27700 5' -54.6 NC_005882.1 + 18398 0.73 0.253787
Target:  5'- gGCCgcGAGCGUCUCGACGgaucACGaCGACAa -3'
miRNA:   3'- -CGG--CUCGCGGAGCUGU----UGUaGCUGUa -5'
27700 5' -54.6 NC_005882.1 + 15241 0.72 0.282103
Target:  5'- gGCCGAGCGUCgcuUCGAgcCAAUcgCGGCAUu -3'
miRNA:   3'- -CGGCUCGCGG---AGCU--GUUGuaGCUGUA- -5'
27700 5' -54.6 NC_005882.1 + 21867 0.72 0.282103
Target:  5'- aGCCGGGCGa--CGAUGGCAUCGACc- -3'
miRNA:   3'- -CGGCUCGCggaGCUGUUGUAGCUGua -5'
27700 5' -54.6 NC_005882.1 + 33165 0.72 0.282103
Target:  5'- uGCCGGGCGCUUgGcCGACcaguUCGGCAa -3'
miRNA:   3'- -CGGCUCGCGGAgCuGUUGu---AGCUGUa -5'
27700 5' -54.6 NC_005882.1 + 24103 0.72 0.289562
Target:  5'- uGCCGAGCGCCUUGu--GC-UCGGCc- -3'
miRNA:   3'- -CGGCUCGCGGAGCuguUGuAGCUGua -5'
27700 5' -54.6 NC_005882.1 + 20213 0.72 0.297175
Target:  5'- cCUGaAGa-CCUCGGCAGCAUCGACAUc -3'
miRNA:   3'- cGGC-UCgcGGAGCUGUUGUAGCUGUA- -5'
27700 5' -54.6 NC_005882.1 + 22702 0.72 0.297175
Target:  5'- gGCCGAacuGCGCCgCGuCGACGUCgGACAg -3'
miRNA:   3'- -CGGCU---CGCGGaGCuGUUGUAG-CUGUa -5'
27700 5' -54.6 NC_005882.1 + 23447 0.72 0.312865
Target:  5'- cGUCGAGCgGCCgcugUCGGCGAUgAUCGACGa -3'
miRNA:   3'- -CGGCUCG-CGG----AGCUGUUG-UAGCUGUa -5'
27700 5' -54.6 NC_005882.1 + 12339 0.71 0.337562
Target:  5'- uGCCGgcGGCGCCgaUCGGCAACGcugguUCGGCc- -3'
miRNA:   3'- -CGGC--UCGCGG--AGCUGUUGU-----AGCUGua -5'
27700 5' -54.6 NC_005882.1 + 21210 0.71 0.346104
Target:  5'- cGCCGAgcagguugaccgGCGCuugCUCGcCGACAUCGGCGg -3'
miRNA:   3'- -CGGCU------------CGCG---GAGCuGUUGUAGCUGUa -5'
27700 5' -54.6 NC_005882.1 + 10533 0.7 0.372649
Target:  5'- uGCCGA-CGCg-UGACAGCGUCGACu- -3'
miRNA:   3'- -CGGCUcGCGgaGCUGUUGUAGCUGua -5'
27700 5' -54.6 NC_005882.1 + 18693 0.7 0.400545
Target:  5'- cGCaGAGCGCgaUCGGCu-CGUCGACAg -3'
miRNA:   3'- -CGgCUCGCGg-AGCUGuuGUAGCUGUa -5'
27700 5' -54.6 NC_005882.1 + 32006 0.7 0.400545
Target:  5'- cGCCGA-CGCCggUCGACuacGCgAUCGACGUg -3'
miRNA:   3'- -CGGCUcGCGG--AGCUGu--UG-UAGCUGUA- -5'
27700 5' -54.6 NC_005882.1 + 24086 0.7 0.410134
Target:  5'- uGCCGGGCgGCCUgGACAAgcUCGAa-- -3'
miRNA:   3'- -CGGCUCG-CGGAgCUGUUguAGCUgua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.