miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27700 5' -54.6 NC_005882.1 + 811 0.66 0.602567
Target:  5'- uUCGAGCGCgUCGACGuGCGUCa---- -3'
miRNA:   3'- cGGCUCGCGgAGCUGU-UGUAGcugua -5'
27700 5' -54.6 NC_005882.1 + 1135 0.67 0.535126
Target:  5'- uGCCGAGCcugagGCCcgcgaucagauuUCGAguACAUCGAUGUc -3'
miRNA:   3'- -CGGCUCG-----CGG------------AGCUguUGUAGCUGUA- -5'
27700 5' -54.6 NC_005882.1 + 2023 0.69 0.429736
Target:  5'- -aCGAGCGCgUCGGCGACAcgGACc- -3'
miRNA:   3'- cgGCUCGCGgAGCUGUUGUagCUGua -5'
27700 5' -54.6 NC_005882.1 + 3602 0.69 0.448858
Target:  5'- aGCCGAgugcgcaGCGCgUCGACGccgcuuGCGUCGAUc- -3'
miRNA:   3'- -CGGCU-------CGCGgAGCUGU------UGUAGCUGua -5'
27700 5' -54.6 NC_005882.1 + 4588 0.78 0.118971
Target:  5'- gGCCGcGCaGCCUCGACGACcUCGACc- -3'
miRNA:   3'- -CGGCuCG-CGGAGCUGUUGuAGCUGua -5'
27700 5' -54.6 NC_005882.1 + 4822 0.67 0.591204
Target:  5'- cGCCG-GCaGCUUCGACAGCGgccUUGAUc- -3'
miRNA:   3'- -CGGCuCG-CGGAGCUGUUGU---AGCUGua -5'
27700 5' -54.6 NC_005882.1 + 5008 0.66 0.602567
Target:  5'- -gCGAGCGgCUU--CAGCGUCGGCAg -3'
miRNA:   3'- cgGCUCGCgGAGcuGUUGUAGCUGUa -5'
27700 5' -54.6 NC_005882.1 + 5321 0.66 0.625365
Target:  5'- cGUCG-GUGCCgggCGuCAugGUCGGCGa -3'
miRNA:   3'- -CGGCuCGCGGa--GCuGUugUAGCUGUa -5'
27700 5' -54.6 NC_005882.1 + 6652 0.66 0.636779
Target:  5'- cGCCGuGCGUCUCGGCGugcugCGcCAa -3'
miRNA:   3'- -CGGCuCGCGGAGCUGUugua-GCuGUa -5'
27700 5' -54.6 NC_005882.1 + 7744 0.81 0.078761
Target:  5'- -gCGAGCGCCUCGACAGCAUucaaacccgccUGACGa -3'
miRNA:   3'- cgGCUCGCGGAGCUGUUGUA-----------GCUGUa -5'
27700 5' -54.6 NC_005882.1 + 8245 0.68 0.481032
Target:  5'- gGCgGcaAGCGCCggUCGGCugauCAUCGACAUc -3'
miRNA:   3'- -CGgC--UCGCGG--AGCUGuu--GUAGCUGUA- -5'
27700 5' -54.6 NC_005882.1 + 8934 0.67 0.539552
Target:  5'- cGCCGAcccgGCaaaagcgcucgcauuGCCUCGACAccGCGUCGcaGCGUg -3'
miRNA:   3'- -CGGCU----CG---------------CGGAGCUGU--UGUAGC--UGUA- -5'
27700 5' -54.6 NC_005882.1 + 10533 0.7 0.372649
Target:  5'- uGCCGA-CGCg-UGACAGCGUCGACu- -3'
miRNA:   3'- -CGGCUcGCGgaGCUGUUGUAGCUGua -5'
27700 5' -54.6 NC_005882.1 + 11838 0.66 0.648189
Target:  5'- cGCCGcGCGgugaucguCCUCGGCGucguaGUCGGCGUc -3'
miRNA:   3'- -CGGCuCGC--------GGAGCUGUug---UAGCUGUA- -5'
27700 5' -54.6 NC_005882.1 + 11968 0.66 0.625365
Target:  5'- cGCCGAGCaaCgCGACGACAaaGGCGa -3'
miRNA:   3'- -CGGCUCGcgGaGCUGUUGUagCUGUa -5'
27700 5' -54.6 NC_005882.1 + 12012 0.69 0.423797
Target:  5'- cGCC-AGCGCCUCGGCGggcacuugcgcggccACGggcgCGGCGg -3'
miRNA:   3'- -CGGcUCGCGGAGCUGU---------------UGUa---GCUGUa -5'
27700 5' -54.6 NC_005882.1 + 12198 0.67 0.579877
Target:  5'- gGCCGgauaGGCGCCcgCGAUccaGUCGACGg -3'
miRNA:   3'- -CGGC----UCGCGGa-GCUGuugUAGCUGUa -5'
27700 5' -54.6 NC_005882.1 + 12339 0.71 0.337562
Target:  5'- uGCCGgcGGCGCCgaUCGGCAACGcugguUCGGCc- -3'
miRNA:   3'- -CGGC--UCGCGG--AGCUGUUGU-----AGCUGua -5'
27700 5' -54.6 NC_005882.1 + 12548 0.66 0.648189
Target:  5'- gGCCG-GCGCUgCGGCGA--UCGGCGc -3'
miRNA:   3'- -CGGCuCGCGGaGCUGUUguAGCUGUa -5'
27700 5' -54.6 NC_005882.1 + 12599 0.66 0.613958
Target:  5'- cGCCGcAGCGCCggCcGCcGCcgCGACAc -3'
miRNA:   3'- -CGGC-UCGCGGa-GcUGuUGuaGCUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.