miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27700 5' -54.6 NC_005882.1 + 4822 0.67 0.591204
Target:  5'- cGCCG-GCaGCUUCGACAGCGgccUUGAUc- -3'
miRNA:   3'- -CGGCuCG-CGGAGCUGUUGU---AGCUGua -5'
27700 5' -54.6 NC_005882.1 + 31783 0.69 0.470527
Target:  5'- cGCCaaGAGCGCgcaccagucgaUCGuCGACGUCGGCGUa -3'
miRNA:   3'- -CGG--CUCGCGg----------AGCuGUUGUAGCUGUA- -5'
27700 5' -54.6 NC_005882.1 + 22954 0.68 0.481032
Target:  5'- cGCCGGGUGCgaCGGCGGCcaaggCGACc- -3'
miRNA:   3'- -CGGCUCGCGgaGCUGUUGua---GCUGua -5'
27700 5' -54.6 NC_005882.1 + 19814 0.68 0.481032
Target:  5'- cGCCG-GCGUgaCGACGACGggcgcCGACAc -3'
miRNA:   3'- -CGGCuCGCGgaGCUGUUGUa----GCUGUa -5'
27700 5' -54.6 NC_005882.1 + 27534 0.68 0.491649
Target:  5'- cGCCcaGGGCGCCgcaaUCGGCAucgggcgcuCGUCGGCGg -3'
miRNA:   3'- -CGG--CUCGCGG----AGCUGUu--------GUAGCUGUa -5'
27700 5' -54.6 NC_005882.1 + 1135 0.67 0.535126
Target:  5'- uGCCGAGCcugagGCCcgcgaucagauuUCGAguACAUCGAUGUc -3'
miRNA:   3'- -CGGCUCG-----CGG------------AGCUguUGUAGCUGUA- -5'
27700 5' -54.6 NC_005882.1 + 14809 0.67 0.546214
Target:  5'- uUCGA-CGCa-CGACGGCGUCGACAa -3'
miRNA:   3'- cGGCUcGCGgaGCUGUUGUAGCUGUa -5'
27700 5' -54.6 NC_005882.1 + 17181 0.67 0.568598
Target:  5'- gGCCGAGCuguauccgaGCCUCGACGcggacgcgcuGCAggaaCGGCu- -3'
miRNA:   3'- -CGGCUCG---------CGGAGCUGU----------UGUa---GCUGua -5'
27700 5' -54.6 NC_005882.1 + 30648 0.67 0.568598
Target:  5'- cGCUGAcGgGCaaCGugAACGUCGACGg -3'
miRNA:   3'- -CGGCU-CgCGgaGCugUUGUAGCUGUa -5'
27700 5' -54.6 NC_005882.1 + 30137 0.69 0.449877
Target:  5'- -aUGAGCGagacCCUCGACGAguUCGGCGc -3'
miRNA:   3'- cgGCUCGC----GGAGCUGUUguAGCUGUa -5'
27700 5' -54.6 NC_005882.1 + 3602 0.69 0.448858
Target:  5'- aGCCGAgugcgcaGCGCgUCGACGccgcuuGCGUCGAUc- -3'
miRNA:   3'- -CGGCU-------CGCGgAGCUGU------UGUAGCUGua -5'
27700 5' -54.6 NC_005882.1 + 24086 0.7 0.410134
Target:  5'- uGCCGGGCgGCCUgGACAAgcUCGAa-- -3'
miRNA:   3'- -CGGCUCG-CGGAgCUGUUguAGCUgua -5'
27700 5' -54.6 NC_005882.1 + 24045 0.8 0.083587
Target:  5'- gGCCGAGCacaagGCgCUCGGCAugAUCGGCAa -3'
miRNA:   3'- -CGGCUCG-----CG-GAGCUGUugUAGCUGUa -5'
27700 5' -54.6 NC_005882.1 + 31627 0.74 0.234116
Target:  5'- cGUCGA-CGaCCUgGGCGACGUCGACGUg -3'
miRNA:   3'- -CGGCUcGC-GGAgCUGUUGUAGCUGUA- -5'
27700 5' -54.6 NC_005882.1 + 18398 0.73 0.253787
Target:  5'- gGCCgcGAGCGUCUCGACGgaucACGaCGACAa -3'
miRNA:   3'- -CGG--CUCGCGGAGCUGU----UGUaGCUGUa -5'
27700 5' -54.6 NC_005882.1 + 20213 0.72 0.297175
Target:  5'- cCUGaAGa-CCUCGGCAGCAUCGACAUc -3'
miRNA:   3'- cGGC-UCgcGGAGCUGUUGUAGCUGUA- -5'
27700 5' -54.6 NC_005882.1 + 23447 0.72 0.312865
Target:  5'- cGUCGAGCgGCCgcugUCGGCGAUgAUCGACGa -3'
miRNA:   3'- -CGGCUCG-CGG----AGCUGUUG-UAGCUGUa -5'
27700 5' -54.6 NC_005882.1 + 12339 0.71 0.337562
Target:  5'- uGCCGgcGGCGCCgaUCGGCAACGcugguUCGGCc- -3'
miRNA:   3'- -CGGC--UCGCGG--AGCUGUUGU-----AGCUGua -5'
27700 5' -54.6 NC_005882.1 + 10533 0.7 0.372649
Target:  5'- uGCCGA-CGCg-UGACAGCGUCGACu- -3'
miRNA:   3'- -CGGCUcGCGgaGCUGUUGUAGCUGua -5'
27700 5' -54.6 NC_005882.1 + 32006 0.7 0.400545
Target:  5'- cGCCGA-CGCCggUCGACuacGCgAUCGACGUg -3'
miRNA:   3'- -CGGCUcGCGG--AGCUGu--UG-UAGCUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.