miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27928 3' -56.6 NC_005886.2 + 16329 1.09 0.000726
Target:  5'- gCUACACGAACGCAACGGCCGGCGCGAu -3'
miRNA:   3'- -GAUGUGCUUGCGUUGCCGGCCGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 29233 0.8 0.089264
Target:  5'- -gGCGCGuuUGCAGCGGCCGGCauauugucGCGAa -3'
miRNA:   3'- gaUGUGCuuGCGUUGCCGGCCG--------CGCU- -5'
27928 3' -56.6 NC_005886.2 + 41563 0.79 0.094479
Target:  5'- -aGCGcCGGACGUuGCGGCCGGUGCGu -3'
miRNA:   3'- gaUGU-GCUUGCGuUGCCGGCCGCGCu -5'
27928 3' -56.6 NC_005886.2 + 41582 0.79 0.105786
Target:  5'- -cGCACGAACagGCGaucaucGCGGCCGGgGCGAu -3'
miRNA:   3'- gaUGUGCUUG--CGU------UGCCGGCCgCGCU- -5'
27928 3' -56.6 NC_005886.2 + 41961 0.75 0.183664
Target:  5'- -gGCGCGGGgGCGGCGuCCGGCGCa- -3'
miRNA:   3'- gaUGUGCUUgCGUUGCcGGCCGCGcu -5'
27928 3' -56.6 NC_005886.2 + 24523 0.75 0.183664
Target:  5'- gUGCGCG-GCGUcACuGGCCGGCGCGc -3'
miRNA:   3'- gAUGUGCuUGCGuUG-CCGGCCGCGCu -5'
27928 3' -56.6 NC_005886.2 + 13432 0.75 0.199011
Target:  5'- gCUGCAagc-CGUGACGGCUGGUGCGAu -3'
miRNA:   3'- -GAUGUgcuuGCGUUGCCGGCCGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 35413 0.73 0.251868
Target:  5'- --gUACGAAUuCGACGGCCGGCcCGAa -3'
miRNA:   3'- gauGUGCUUGcGUUGCCGGCCGcGCU- -5'
27928 3' -56.6 NC_005886.2 + 16476 0.73 0.258406
Target:  5'- -gACGCGAACG--GCGGUCGaGUGCGAu -3'
miRNA:   3'- gaUGUGCUUGCguUGCCGGC-CGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 35675 0.72 0.278854
Target:  5'- aUACuuGGACGCAugGGCCGGUa--- -3'
miRNA:   3'- gAUGugCUUGCGUugCCGGCCGcgcu -5'
27928 3' -56.6 NC_005886.2 + 5517 0.72 0.285951
Target:  5'- cCUGCuuGCGAAUaaguCGGCUGGCGCGAa -3'
miRNA:   3'- -GAUG--UGCUUGcguuGCCGGCCGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 20677 0.72 0.285951
Target:  5'- uCUGCAucgguUGGACGCAua-GCCGGCGUGAu -3'
miRNA:   3'- -GAUGU-----GCUUGCGUugcCGGCCGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 13458 0.72 0.293189
Target:  5'- -aACugGAuCGaaguCGGCCGGCGCGu -3'
miRNA:   3'- gaUGugCUuGCguu-GCCGGCCGCGCu -5'
27928 3' -56.6 NC_005886.2 + 43893 0.72 0.308093
Target:  5'- -gGCAUGGGCGCAcCGGCaggaugGGCGCa- -3'
miRNA:   3'- gaUGUGCUUGCGUuGCCGg-----CCGCGcu -5'
27928 3' -56.6 NC_005886.2 + 41887 0.71 0.315759
Target:  5'- uUGCACGAuac---CGGCCGGCGCGu -3'
miRNA:   3'- gAUGUGCUugcguuGCCGGCCGCGCu -5'
27928 3' -56.6 NC_005886.2 + 37129 0.71 0.315759
Target:  5'- -cACGCGAACgGCGaucgcugaaGCGGCaGGCGUGAc -3'
miRNA:   3'- gaUGUGCUUG-CGU---------UGCCGgCCGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 24445 0.71 0.323568
Target:  5'- -aGCGCGAGCGCGcCGGCCaGUGaCGc -3'
miRNA:   3'- gaUGUGCUUGCGUuGCCGGcCGC-GCu -5'
27928 3' -56.6 NC_005886.2 + 36255 0.71 0.323568
Target:  5'- -gGCACGGGCggcgGCGGCGGCaCGG-GCGGc -3'
miRNA:   3'- gaUGUGCUUG----CGUUGCCG-GCCgCGCU- -5'
27928 3' -56.6 NC_005886.2 + 36155 0.71 0.337172
Target:  5'- -cGCACGGgucgaauuuuucccACGCGGCGGCaCGG-GCGGc -3'
miRNA:   3'- gaUGUGCU--------------UGCGUUGCCG-GCCgCGCU- -5'
27928 3' -56.6 NC_005886.2 + 43839 0.71 0.339615
Target:  5'- -gGCAUGGGCGCAcCGGCaggcaugGGCGCa- -3'
miRNA:   3'- gaUGUGCUUGCGUuGCCGg------CCGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.