miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27928 3' -56.6 NC_005886.2 + 46955 0.68 0.518556
Target:  5'- -gAUGCGAucauuCGCAuugccgaucUGGCCGGCGCGc -3'
miRNA:   3'- gaUGUGCUu----GCGUu--------GCCGGCCGCGCu -5'
27928 3' -56.6 NC_005886.2 + 41484 0.7 0.400216
Target:  5'- -gACGcCGAACGCAcCGGCCgcaacguccGGCGCu- -3'
miRNA:   3'- gaUGU-GCUUGCGUuGCCGG---------CCGCGcu -5'
27928 3' -56.6 NC_005886.2 + 36204 0.69 0.408494
Target:  5'- -gGCACGGGCggcaucgGCGGCGGCaCGG-GCGGc -3'
miRNA:   3'- gaUGUGCUUG-------CGUUGCCG-GCCgCGCU- -5'
27928 3' -56.6 NC_005886.2 + 46808 0.69 0.437805
Target:  5'- -cGCAguCGAACGCAugcuuGCCGGCGCa- -3'
miRNA:   3'- gaUGU--GCUUGCGUugc--CGGCCGCGcu -5'
27928 3' -56.6 NC_005886.2 + 44041 0.68 0.487496
Target:  5'- ---uGCG-AUGCaAGCGGCCGGCGUu- -3'
miRNA:   3'- gaugUGCuUGCG-UUGCCGGCCGCGcu -5'
27928 3' -56.6 NC_005886.2 + 38566 0.68 0.487496
Target:  5'- ---aGCGAGCGCGACGGaCGGgauacCGUGAc -3'
miRNA:   3'- gaugUGCUUGCGUUGCCgGCC-----GCGCU- -5'
27928 3' -56.6 NC_005886.2 + 41812 0.68 0.487496
Target:  5'- -aACcCGAACGCGcCGGCCGGUaucguGCa- -3'
miRNA:   3'- gaUGuGCUUGCGUuGCCGGCCG-----CGcu -5'
27928 3' -56.6 NC_005886.2 + 39186 0.68 0.494667
Target:  5'- gUugACGAauGCGCAugcacgccucgaauGCGGCaaGGUGCGAu -3'
miRNA:   3'- gAugUGCU--UGCGU--------------UGCCGg-CCGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 25782 0.68 0.517507
Target:  5'- ---gACGAucACGCAucGCGGCCgcgugucGGCGCGu -3'
miRNA:   3'- gaugUGCU--UGCGU--UGCCGG-------CCGCGCu -5'
27928 3' -56.6 NC_005886.2 + 4472 0.7 0.364752
Target:  5'- -aGCAUG-ACGC--CGGCCGGaCGCGGc -3'
miRNA:   3'- gaUGUGCuUGCGuuGCCGGCC-GCGCU- -5'
27928 3' -56.6 NC_005886.2 + 33927 0.71 0.347853
Target:  5'- ---gACGGugGCGGaaaccauuCGGUCGGCGCGGc -3'
miRNA:   3'- gaugUGCUugCGUU--------GCCGGCCGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 43839 0.71 0.339615
Target:  5'- -gGCAUGGGCGCAcCGGCaggcaugGGCGCa- -3'
miRNA:   3'- gaUGUGCUUGCGUuGCCGg------CCGCGcu -5'
27928 3' -56.6 NC_005886.2 + 41582 0.79 0.105786
Target:  5'- -cGCACGAACagGCGaucaucGCGGCCGGgGCGAu -3'
miRNA:   3'- gaUGUGCUUG--CGU------UGCCGGCCgCGCU- -5'
27928 3' -56.6 NC_005886.2 + 20677 0.72 0.285951
Target:  5'- uCUGCAucgguUGGACGCAua-GCCGGCGUGAu -3'
miRNA:   3'- -GAUGU-----GCUUGCGUugcCGGCCGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 13458 0.72 0.293189
Target:  5'- -aACugGAuCGaaguCGGCCGGCGCGu -3'
miRNA:   3'- gaUGugCUuGCguu-GCCGGCCGCGCu -5'
27928 3' -56.6 NC_005886.2 + 43893 0.72 0.308093
Target:  5'- -gGCAUGGGCGCAcCGGCaggaugGGCGCa- -3'
miRNA:   3'- gaUGUGCUUGCGUuGCCGg-----CCGCGcu -5'
27928 3' -56.6 NC_005886.2 + 36255 0.71 0.323568
Target:  5'- -gGCACGGGCggcgGCGGCGGCaCGG-GCGGc -3'
miRNA:   3'- gaUGUGCUUG----CGUUGCCG-GCCgCGCU- -5'
27928 3' -56.6 NC_005886.2 + 24445 0.71 0.323568
Target:  5'- -aGCGCGAGCGCGcCGGCCaGUGaCGc -3'
miRNA:   3'- gaUGUGCUUGCGUuGCCGGcCGC-GCu -5'
27928 3' -56.6 NC_005886.2 + 36155 0.71 0.337172
Target:  5'- -cGCACGGgucgaauuuuucccACGCGGCGGCaCGG-GCGGc -3'
miRNA:   3'- gaUGUGCU--------------UGCGUUGCCG-GCCgCGCU- -5'
27928 3' -56.6 NC_005886.2 + 19493 0.71 0.339615
Target:  5'- gUACAC-AACGcCAGCGGCCGGaCGUu- -3'
miRNA:   3'- gAUGUGcUUGC-GUUGCCGGCC-GCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.