miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27928 3' -56.6 NC_005886.2 + 36255 0.71 0.323568
Target:  5'- -gGCACGGGCggcgGCGGCGGCaCGG-GCGGc -3'
miRNA:   3'- gaUGUGCUUG----CGUUGCCG-GCCgCGCU- -5'
27928 3' -56.6 NC_005886.2 + 24445 0.71 0.323568
Target:  5'- -aGCGCGAGCGCGcCGGCCaGUGaCGc -3'
miRNA:   3'- gaUGUGCUUGCGUuGCCGGcCGC-GCu -5'
27928 3' -56.6 NC_005886.2 + 36155 0.71 0.337172
Target:  5'- -cGCACGGgucgaauuuuucccACGCGGCGGCaCGG-GCGGc -3'
miRNA:   3'- gaUGUGCU--------------UGCGUUGCCG-GCCgCGCU- -5'
27928 3' -56.6 NC_005886.2 + 19493 0.71 0.339615
Target:  5'- gUACAC-AACGcCAGCGGCCGGaCGUu- -3'
miRNA:   3'- gAUGUGcUUGC-GUUGCCGGCC-GCGcu -5'
27928 3' -56.6 NC_005886.2 + 43839 0.71 0.339615
Target:  5'- -gGCAUGGGCGCAcCGGCaggcaugGGCGCa- -3'
miRNA:   3'- gaUGUGCUUGCGUuGCCGg------CCGCGcu -5'
27928 3' -56.6 NC_005886.2 + 33927 0.71 0.347853
Target:  5'- ---gACGGugGCGGaaaccauuCGGUCGGCGCGGc -3'
miRNA:   3'- gaugUGCUugCGUU--------GCCGGCCGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 4472 0.7 0.364752
Target:  5'- -aGCAUG-ACGC--CGGCCGGaCGCGGc -3'
miRNA:   3'- gaUGUGCuUGCGuuGCCGGCC-GCGCU- -5'
27928 3' -56.6 NC_005886.2 + 5517 0.72 0.285951
Target:  5'- cCUGCuuGCGAAUaaguCGGCUGGCGCGAa -3'
miRNA:   3'- -GAUG--UGCUUGcguuGCCGGCCGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 41887 0.71 0.315759
Target:  5'- uUGCACGAuac---CGGCCGGCGCGu -3'
miRNA:   3'- gAUGUGCUugcguuGCCGGCCGCGCu -5'
27928 3' -56.6 NC_005886.2 + 37129 0.71 0.315759
Target:  5'- -cACGCGAACgGCGaucgcugaaGCGGCaGGCGUGAc -3'
miRNA:   3'- gaUGUGCUUG-CGU---------UGCCGgCCGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 29864 0.7 0.364752
Target:  5'- -gGC-CGaAGCGCAAgGGCCGGcCGCa- -3'
miRNA:   3'- gaUGuGC-UUGCGUUgCCGGCC-GCGcu -5'
27928 3' -56.6 NC_005886.2 + 1134 0.7 0.390246
Target:  5'- cCUGCAUGGGCGUGACGcGCgGgguuaagccucacGCGCGAu -3'
miRNA:   3'- -GAUGUGCUUGCGUUGC-CGgC-------------CGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 35675 0.72 0.278854
Target:  5'- aUACuuGGACGCAugGGCCGGUa--- -3'
miRNA:   3'- gAUGugCUUGCGUugCCGGCCGcgcu -5'
27928 3' -56.6 NC_005886.2 + 16476 0.73 0.258406
Target:  5'- -gACGCGAACG--GCGGUCGaGUGCGAu -3'
miRNA:   3'- gaUGUGCUUGCguUGCCGGC-CGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 35413 0.73 0.251868
Target:  5'- --gUACGAAUuCGACGGCCGGCcCGAa -3'
miRNA:   3'- gauGUGCUUGcGUUGCCGGCCGcGCU- -5'
27928 3' -56.6 NC_005886.2 + 13432 0.75 0.199011
Target:  5'- gCUGCAagc-CGUGACGGCUGGUGCGAu -3'
miRNA:   3'- -GAUGUgcuuGCGUUGCCGGCCGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 41961 0.75 0.183664
Target:  5'- -gGCGCGGGgGCGGCGuCCGGCGCa- -3'
miRNA:   3'- gaUGUGCUUgCGUUGCcGGCCGCGcu -5'
27928 3' -56.6 NC_005886.2 + 24523 0.75 0.183664
Target:  5'- gUGCGCG-GCGUcACuGGCCGGCGCGc -3'
miRNA:   3'- gAUGUGCuUGCGuUG-CCGGCCGCGCu -5'
27928 3' -56.6 NC_005886.2 + 41563 0.79 0.094479
Target:  5'- -aGCGcCGGACGUuGCGGCCGGUGCGu -3'
miRNA:   3'- gaUGU-GCUUGCGuUGCCGGCCGCGCu -5'
27928 3' -56.6 NC_005886.2 + 28784 0.66 0.637432
Target:  5'- --cCACGAugGC-ACGaaCGGUGCGAc -3'
miRNA:   3'- gauGUGCUugCGuUGCcgGCCGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.