miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27928 3' -56.6 NC_005886.2 + 19493 0.71 0.339615
Target:  5'- gUACAC-AACGcCAGCGGCCGGaCGUu- -3'
miRNA:   3'- gAUGUGcUUGC-GUUGCCGGCC-GCGcu -5'
27928 3' -56.6 NC_005886.2 + 20677 0.72 0.285951
Target:  5'- uCUGCAucgguUGGACGCAua-GCCGGCGUGAu -3'
miRNA:   3'- -GAUGU-----GCUUGCGUugcCGGCCGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 22147 0.69 0.457342
Target:  5'- uUGC-CGAACGCAuCGaGCCGcGCGuCGGu -3'
miRNA:   3'- gAUGuGCUUGCGUuGC-CGGC-CGC-GCU- -5'
27928 3' -56.6 NC_005886.2 + 22896 0.67 0.57191
Target:  5'- -aACuCGGGCGaUAGCGuGCCGGUGCu- -3'
miRNA:   3'- gaUGuGCUUGC-GUUGC-CGGCCGCGcu -5'
27928 3' -56.6 NC_005886.2 + 24445 0.71 0.323568
Target:  5'- -aGCGCGAGCGCGcCGGCCaGUGaCGc -3'
miRNA:   3'- gaUGUGCUUGCGUuGCCGGcCGC-GCu -5'
27928 3' -56.6 NC_005886.2 + 24523 0.75 0.183664
Target:  5'- gUGCGCG-GCGUcACuGGCCGGCGCGc -3'
miRNA:   3'- gAUGUGCuUGCGuUG-CCGGCCGCGCu -5'
27928 3' -56.6 NC_005886.2 + 24759 0.67 0.529085
Target:  5'- -cGCGCGGACGCGgggcuucuaGCGGCCGucaaGCa- -3'
miRNA:   3'- gaUGUGCUUGCGU---------UGCCGGCcg--CGcu -5'
27928 3' -56.6 NC_005886.2 + 24915 0.66 0.604566
Target:  5'- -aACGCcccGCGCGAcCGGCUcGCGCGGg -3'
miRNA:   3'- gaUGUGcu-UGCGUU-GCCGGcCGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 25711 0.68 0.467285
Target:  5'- gUGCGCGc-CGCAugGGaaCUGGCGUGGc -3'
miRNA:   3'- gAUGUGCuuGCGUugCC--GGCCGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 25782 0.68 0.517507
Target:  5'- ---gACGAucACGCAucGCGGCCgcgugucGGCGCGu -3'
miRNA:   3'- gaugUGCU--UGCGU--UGCCGG-------CCGCGCu -5'
27928 3' -56.6 NC_005886.2 + 25819 0.67 0.57191
Target:  5'- -aACGCagccauAGCGCAAUGGCUGGCGa-- -3'
miRNA:   3'- gaUGUGc-----UUGCGUUGCCGGCCGCgcu -5'
27928 3' -56.6 NC_005886.2 + 26325 0.68 0.467285
Target:  5'- ---aGCGAuCGCGGCGGCCGGUa--- -3'
miRNA:   3'- gaugUGCUuGCGUUGCCGGCCGcgcu -5'
27928 3' -56.6 NC_005886.2 + 27065 0.66 0.626469
Target:  5'- --cCGCGuaGAUGUAgaaACGGCCcGCGCGAu -3'
miRNA:   3'- gauGUGC--UUGCGU---UGCCGGcCGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 28784 0.66 0.637432
Target:  5'- --cCACGAugGC-ACGaaCGGUGCGAc -3'
miRNA:   3'- gauGUGCUugCGuUGCcgGCCGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 29233 0.8 0.089264
Target:  5'- -gGCGCGuuUGCAGCGGCCGGCauauugucGCGAa -3'
miRNA:   3'- gaUGUGCuuGCGUUGCCGGCCG--------CGCU- -5'
27928 3' -56.6 NC_005886.2 + 29864 0.7 0.364752
Target:  5'- -gGC-CGaAGCGCAAgGGCCGGcCGCa- -3'
miRNA:   3'- gaUGuGC-UUGCGUUgCCGGCC-GCGcu -5'
27928 3' -56.6 NC_005886.2 + 32596 0.7 0.391146
Target:  5'- aUGCAgGGuuUGCAGCGGCCGGUGa-- -3'
miRNA:   3'- gAUGUgCUu-GCGUUGCCGGCCGCgcu -5'
27928 3' -56.6 NC_005886.2 + 32842 0.66 0.626469
Target:  5'- -cAgACGAACGCAugauCcGCuCGGUGCGGa -3'
miRNA:   3'- gaUgUGCUUGCGUu---GcCG-GCCGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 33146 0.67 0.561111
Target:  5'- -aACGCuGcAugGCAugGGCCGGU-CGAu -3'
miRNA:   3'- gaUGUG-C-UugCGUugCCGGCCGcGCU- -5'
27928 3' -56.6 NC_005886.2 + 33927 0.71 0.347853
Target:  5'- ---gACGGugGCGGaaaccauuCGGUCGGCGCGGc -3'
miRNA:   3'- gaugUGCUugCGUU--------GCCGGCCGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.