miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27928 3' -56.6 NC_005886.2 + 627 0.69 0.457342
Target:  5'- aCUGCuaucCGAuuACGCGACGGCaguucaacaGCGCGAu -3'
miRNA:   3'- -GAUGu---GCU--UGCGUUGCCGgc-------CGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 758 0.69 0.437805
Target:  5'- uUAgGCGugcuuGCGCuuguuGCGGCCGGCuugguuGCGAu -3'
miRNA:   3'- gAUgUGCu----UGCGu----UGCCGGCCG------CGCU- -5'
27928 3' -56.6 NC_005886.2 + 1134 0.7 0.390246
Target:  5'- cCUGCAUGGGCGUGACGcGCgGgguuaagccucacGCGCGAu -3'
miRNA:   3'- -GAUGUGCUUGCGUUGC-CGgC-------------CGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 2733 0.66 0.582758
Target:  5'- -aACGguuCGAAucuuCGC-GCGGCCGGCGUGu -3'
miRNA:   3'- gaUGU---GCUU----GCGuUGCCGGCCGCGCu -5'
27928 3' -56.6 NC_005886.2 + 4472 0.7 0.364752
Target:  5'- -aGCAUG-ACGC--CGGCCGGaCGCGGc -3'
miRNA:   3'- gaUGUGCuUGCGuuGCCGGCC-GCGCU- -5'
27928 3' -56.6 NC_005886.2 + 5517 0.72 0.285951
Target:  5'- cCUGCuuGCGAAUaaguCGGCUGGCGCGAa -3'
miRNA:   3'- -GAUG--UGCUUGcguuGCCGGCCGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 6540 0.68 0.467285
Target:  5'- aCUGCgauGCGAGCGCAACGcGCUGaaaugcaauaCGCGAu -3'
miRNA:   3'- -GAUG---UGCUUGCGUUGC-CGGCc---------GCGCU- -5'
27928 3' -56.6 NC_005886.2 + 7190 0.66 0.604566
Target:  5'- --gUACGAcaACaCGACGGCCGGCaGCu- -3'
miRNA:   3'- gauGUGCU--UGcGUUGCCGGCCG-CGcu -5'
27928 3' -56.6 NC_005886.2 + 9558 0.7 0.399303
Target:  5'- --uUACGAauugACGCAaggcaaagagcaaGCGGCCGGCcgaGCGAu -3'
miRNA:   3'- gauGUGCU----UGCGU-------------UGCCGGCCG---CGCU- -5'
27928 3' -56.6 NC_005886.2 + 9664 0.68 0.508111
Target:  5'- -cACGCGGuaucGCGCAAUGGCuugguuCGcGCGUGAa -3'
miRNA:   3'- gaUGUGCU----UGCGUUGCCG------GC-CGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 11574 0.66 0.593646
Target:  5'- gCUAUGuCGAACuccCGGgGGCCGGUGCGc -3'
miRNA:   3'- -GAUGU-GCUUGc--GUUgCCGGCCGCGCu -5'
27928 3' -56.6 NC_005886.2 + 11941 0.66 0.626469
Target:  5'- -gGguCGGGCGUggcaAACGGCCGGUG-GAu -3'
miRNA:   3'- gaUguGCUUGCG----UUGCCGGCCGCgCU- -5'
27928 3' -56.6 NC_005886.2 + 13432 0.75 0.199011
Target:  5'- gCUGCAagc-CGUGACGGCUGGUGCGAu -3'
miRNA:   3'- -GAUGUgcuuGCGUUGCCGGCCGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 13458 0.72 0.293189
Target:  5'- -aACugGAuCGaaguCGGCCGGCGCGu -3'
miRNA:   3'- gaUGugCUuGCguu-GCCGGCCGCGCu -5'
27928 3' -56.6 NC_005886.2 + 13623 0.69 0.428217
Target:  5'- -cGCaACGAGUGCGGCGGauguCGGCGCGu -3'
miRNA:   3'- gaUG-UGCUUGCGUUGCCg---GCCGCGCu -5'
27928 3' -56.6 NC_005886.2 + 15147 0.66 0.625372
Target:  5'- aUACAUGAauucgGCGCAccaucgcGCGGCauccccGCGCGAu -3'
miRNA:   3'- gAUGUGCU-----UGCGU-------UGCCGgc----CGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 16329 1.09 0.000726
Target:  5'- gCUACACGAACGCAACGGCCGGCGCGAu -3'
miRNA:   3'- -GAUGUGCUUGCGUUGCCGGCCGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 16476 0.73 0.258406
Target:  5'- -gACGCGAACG--GCGGUCGaGUGCGAu -3'
miRNA:   3'- gaUGUGCUUGCguUGCCGGC-CGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 16691 0.67 0.533319
Target:  5'- -cGCugGAaaucaucgcagaccuGCGCAACGGCCuuaccGCGCu- -3'
miRNA:   3'- gaUGugCU---------------UGCGUUGCCGGc----CGCGcu -5'
27928 3' -56.6 NC_005886.2 + 19493 0.66 0.626469
Target:  5'- -gGCACGuGGgGCuugcCGGCCGGCuCGAu -3'
miRNA:   3'- gaUGUGC-UUgCGuu--GCCGGCCGcGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.