miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27928 3' -56.6 NC_005886.2 + 46955 0.68 0.518556
Target:  5'- -gAUGCGAucauuCGCAuugccgaucUGGCCGGCGCGc -3'
miRNA:   3'- gaUGUGCUu----GCGUu--------GCCGGCCGCGCu -5'
27928 3' -56.6 NC_005886.2 + 46904 0.66 0.593646
Target:  5'- -aGCGCGAuuuucuGCGCGACGagugcGCCGGCaaGCa- -3'
miRNA:   3'- gaUGUGCU------UGCGUUGC-----CGGCCG--CGcu -5'
27928 3' -56.6 NC_005886.2 + 46808 0.69 0.437805
Target:  5'- -cGCAguCGAACGCAugcuuGCCGGCGCa- -3'
miRNA:   3'- gaUGU--GCUUGCGUugc--CGGCCGCGcu -5'
27928 3' -56.6 NC_005886.2 + 44041 0.68 0.487496
Target:  5'- ---uGCG-AUGCaAGCGGCCGGCGUu- -3'
miRNA:   3'- gaugUGCuUGCG-UUGCCGGCCGCGcu -5'
27928 3' -56.6 NC_005886.2 + 43893 0.72 0.308093
Target:  5'- -gGCAUGGGCGCAcCGGCaggaugGGCGCa- -3'
miRNA:   3'- gaUGUGCUUGCGUuGCCGg-----CCGCGcu -5'
27928 3' -56.6 NC_005886.2 + 43839 0.71 0.339615
Target:  5'- -gGCAUGGGCGCAcCGGCaggcaugGGCGCa- -3'
miRNA:   3'- gaUGUGCUUGCGUuGCCGg------CCGCGcu -5'
27928 3' -56.6 NC_005886.2 + 43761 0.66 0.593646
Target:  5'- -gACGCuGGCGCAGCGuUgGGCGCGc -3'
miRNA:   3'- gaUGUGcUUGCGUUGCcGgCCGCGCu -5'
27928 3' -56.6 NC_005886.2 + 42918 0.67 0.550369
Target:  5'- -cGCACGuucgauGCGCAACaauuccguGUCGGCGCGu -3'
miRNA:   3'- gaUGUGCu-----UGCGUUGc-------CGGCCGCGCu -5'
27928 3' -56.6 NC_005886.2 + 41961 0.75 0.183664
Target:  5'- -gGCGCGGGgGCGGCGuCCGGCGCa- -3'
miRNA:   3'- gaUGUGCUUgCGUUGCcGGCCGCGcu -5'
27928 3' -56.6 NC_005886.2 + 41887 0.71 0.315759
Target:  5'- uUGCACGAuac---CGGCCGGCGCGu -3'
miRNA:   3'- gAUGUGCUugcguuGCCGGCCGCGCu -5'
27928 3' -56.6 NC_005886.2 + 41812 0.68 0.487496
Target:  5'- -aACcCGAACGCGcCGGCCGGUaucguGCa- -3'
miRNA:   3'- gaUGuGCUUGCGUuGCCGGCCG-----CGcu -5'
27928 3' -56.6 NC_005886.2 + 41582 0.79 0.105786
Target:  5'- -cGCACGAACagGCGaucaucGCGGCCGGgGCGAu -3'
miRNA:   3'- gaUGUGCUUG--CGU------UGCCGGCCgCGCU- -5'
27928 3' -56.6 NC_005886.2 + 41563 0.79 0.094479
Target:  5'- -aGCGcCGGACGUuGCGGCCGGUGCGu -3'
miRNA:   3'- gaUGU-GCUUGCGuUGCCGGCCGCGCu -5'
27928 3' -56.6 NC_005886.2 + 41484 0.7 0.400216
Target:  5'- -gACGcCGAACGCAcCGGCCgcaacguccGGCGCu- -3'
miRNA:   3'- gaUGU-GCUUGCGUuGCCGG---------CCGCGcu -5'
27928 3' -56.6 NC_005886.2 + 39186 0.68 0.494667
Target:  5'- gUugACGAauGCGCAugcacgccucgaauGCGGCaaGGUGCGAu -3'
miRNA:   3'- gAugUGCU--UGCGU--------------UGCCGg-CCGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 38819 0.66 0.582758
Target:  5'- gUGCcCGcAGCGCAGCGGUCGccgaGCGGa -3'
miRNA:   3'- gAUGuGC-UUGCGUUGCCGGCcg--CGCU- -5'
27928 3' -56.6 NC_005886.2 + 38566 0.68 0.487496
Target:  5'- ---aGCGAGCGCGACGGaCGGgauacCGUGAc -3'
miRNA:   3'- gaugUGCUUGCGUUGCCgGCC-----GCGCU- -5'
27928 3' -56.6 NC_005886.2 + 37129 0.71 0.315759
Target:  5'- -cACGCGAACgGCGaucgcugaaGCGGCaGGCGUGAc -3'
miRNA:   3'- gaUGUGCUUG-CGU---------UGCCGgCCGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 36330 0.66 0.587108
Target:  5'- -gGCACGGGCgGCAcgggcggugguacggGCGGCauCGGCgGCGGc -3'
miRNA:   3'- gaUGUGCUUG-CGU---------------UGCCG--GCCG-CGCU- -5'
27928 3' -56.6 NC_005886.2 + 36255 0.71 0.323568
Target:  5'- -gGCACGGGCggcgGCGGCGGCaCGG-GCGGc -3'
miRNA:   3'- gaUGUGCUUG----CGUUGCCG-GCCgCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.