miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27928 3' -56.6 NC_005886.2 + 16329 1.09 0.000726
Target:  5'- gCUACACGAACGCAACGGCCGGCGCGAu -3'
miRNA:   3'- -GAUGUGCUUGCGUUGCCGGCCGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 627 0.69 0.457342
Target:  5'- aCUGCuaucCGAuuACGCGACGGCaguucaacaGCGCGAu -3'
miRNA:   3'- -GAUGu---GCU--UGCGUUGCCGgc-------CGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 6540 0.68 0.467285
Target:  5'- aCUGCgauGCGAGCGCAACGcGCUGaaaugcaauaCGCGAu -3'
miRNA:   3'- -GAUG---UGCUUGCGUUGC-CGGCc---------GCGCU- -5'
27928 3' -56.6 NC_005886.2 + 28784 0.66 0.637432
Target:  5'- --cCACGAugGC-ACGaaCGGUGCGAc -3'
miRNA:   3'- gauGUGCUugCGuUGCcgGCCGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 13432 0.75 0.199011
Target:  5'- gCUGCAagc-CGUGACGGCUGGUGCGAu -3'
miRNA:   3'- -GAUGUgcuuGCGUUGCCGGCCGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 35413 0.73 0.251868
Target:  5'- --gUACGAAUuCGACGGCCGGCcCGAa -3'
miRNA:   3'- gauGUGCUUGcGUUGCCGGCCGcGCU- -5'
27928 3' -56.6 NC_005886.2 + 35675 0.72 0.278854
Target:  5'- aUACuuGGACGCAugGGCCGGUa--- -3'
miRNA:   3'- gAUGugCUUGCGUugCCGGCCGcgcu -5'
27928 3' -56.6 NC_005886.2 + 5517 0.72 0.285951
Target:  5'- cCUGCuuGCGAAUaaguCGGCUGGCGCGAa -3'
miRNA:   3'- -GAUG--UGCUUGcguuGCCGGCCGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 29864 0.7 0.364752
Target:  5'- -gGC-CGaAGCGCAAgGGCCGGcCGCa- -3'
miRNA:   3'- gaUGuGC-UUGCGUUgCCGGCC-GCGcu -5'
27928 3' -56.6 NC_005886.2 + 758 0.69 0.437805
Target:  5'- uUAgGCGugcuuGCGCuuguuGCGGCCGGCuugguuGCGAu -3'
miRNA:   3'- gAUgUGCu----UGCGu----UGCCGGCCG------CGCU- -5'
27928 3' -56.6 NC_005886.2 + 32596 0.7 0.391146
Target:  5'- aUGCAgGGuuUGCAGCGGCCGGUGa-- -3'
miRNA:   3'- gAUGUgCUu-GCGUUGCCGGCCGCgcu -5'
27928 3' -56.6 NC_005886.2 + 37129 0.71 0.315759
Target:  5'- -cACGCGAACgGCGaucgcugaaGCGGCaGGCGUGAc -3'
miRNA:   3'- gaUGUGCUUG-CGU---------UGCCGgCCGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 41563 0.79 0.094479
Target:  5'- -aGCGcCGGACGUuGCGGCCGGUGCGu -3'
miRNA:   3'- gaUGU-GCUUGCGuUGCCGGCCGCGCu -5'
27928 3' -56.6 NC_005886.2 + 9558 0.7 0.399303
Target:  5'- --uUACGAauugACGCAaggcaaagagcaaGCGGCCGGCcgaGCGAu -3'
miRNA:   3'- gauGUGCU----UGCGU-------------UGCCGGCCG---CGCU- -5'
27928 3' -56.6 NC_005886.2 + 24523 0.75 0.183664
Target:  5'- gUGCGCG-GCGUcACuGGCCGGCGCGc -3'
miRNA:   3'- gAUGUGCuUGCGuUG-CCGGCCGCGCu -5'
27928 3' -56.6 NC_005886.2 + 41887 0.71 0.315759
Target:  5'- uUGCACGAuac---CGGCCGGCGCGu -3'
miRNA:   3'- gAUGUGCUugcguuGCCGGCCGCGCu -5'
27928 3' -56.6 NC_005886.2 + 13623 0.69 0.428217
Target:  5'- -cGCaACGAGUGCGGCGGauguCGGCGCGu -3'
miRNA:   3'- gaUG-UGCUUGCGUUGCCg---GCCGCGCu -5'
27928 3' -56.6 NC_005886.2 + 22147 0.69 0.457342
Target:  5'- uUGC-CGAACGCAuCGaGCCGcGCGuCGGu -3'
miRNA:   3'- gAUGuGCUUGCGUuGC-CGGC-CGC-GCU- -5'
27928 3' -56.6 NC_005886.2 + 41961 0.75 0.183664
Target:  5'- -gGCGCGGGgGCGGCGuCCGGCGCa- -3'
miRNA:   3'- gaUGUGCUUgCGUUGCcGGCCGCGcu -5'
27928 3' -56.6 NC_005886.2 + 16476 0.73 0.258406
Target:  5'- -gACGCGAACG--GCGGUCGaGUGCGAu -3'
miRNA:   3'- gaUGUGCUUGCguUGCCGGC-CGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.