miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27928 3' -56.6 NC_005886.2 + 46955 0.68 0.518556
Target:  5'- -gAUGCGAucauuCGCAuugccgaucUGGCCGGCGCGc -3'
miRNA:   3'- gaUGUGCUu----GCGUu--------GCCGGCCGCGCu -5'
27928 3' -56.6 NC_005886.2 + 25782 0.68 0.517507
Target:  5'- ---gACGAucACGCAucGCGGCCgcgugucGGCGCGu -3'
miRNA:   3'- gaugUGCU--UGCGU--UGCCGG-------CCGCGCu -5'
27928 3' -56.6 NC_005886.2 + 9664 0.68 0.508111
Target:  5'- -cACGCGGuaucGCGCAAUGGCuugguuCGcGCGUGAa -3'
miRNA:   3'- gaUGUGCU----UGCGUUGCCG------GC-CGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 39186 0.68 0.494667
Target:  5'- gUugACGAauGCGCAugcacgccucgaauGCGGCaaGGUGCGAu -3'
miRNA:   3'- gAugUGCU--UGCGU--------------UGCCGg-CCGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 41812 0.68 0.487496
Target:  5'- -aACcCGAACGCGcCGGCCGGUaucguGCa- -3'
miRNA:   3'- gaUGuGCUUGCGUuGCCGGCCG-----CGcu -5'
27928 3' -56.6 NC_005886.2 + 38566 0.68 0.487496
Target:  5'- ---aGCGAGCGCGACGGaCGGgauacCGUGAc -3'
miRNA:   3'- gaugUGCUUGCGUUGCCgGCC-----GCGCU- -5'
27928 3' -56.6 NC_005886.2 + 44041 0.68 0.487496
Target:  5'- ---uGCG-AUGCaAGCGGCCGGCGUu- -3'
miRNA:   3'- gaugUGCuUGCG-UUGCCGGCCGCGcu -5'
27928 3' -56.6 NC_005886.2 + 6540 0.68 0.467285
Target:  5'- aCUGCgauGCGAGCGCAACGcGCUGaaaugcaauaCGCGAu -3'
miRNA:   3'- -GAUG---UGCUUGCGUUGC-CGGCc---------GCGCU- -5'
27928 3' -56.6 NC_005886.2 + 25711 0.68 0.467285
Target:  5'- gUGCGCGc-CGCAugGGaaCUGGCGUGGc -3'
miRNA:   3'- gAUGUGCuuGCGUugCC--GGCCGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 26325 0.68 0.467285
Target:  5'- ---aGCGAuCGCGGCGGCCGGUa--- -3'
miRNA:   3'- gaugUGCUuGCGUUGCCGGCCGcgcu -5'
27928 3' -56.6 NC_005886.2 + 22147 0.69 0.457342
Target:  5'- uUGC-CGAACGCAuCGaGCCGcGCGuCGGu -3'
miRNA:   3'- gAUGuGCUUGCGUuGC-CGGC-CGC-GCU- -5'
27928 3' -56.6 NC_005886.2 + 627 0.69 0.457342
Target:  5'- aCUGCuaucCGAuuACGCGACGGCaguucaacaGCGCGAu -3'
miRNA:   3'- -GAUGu---GCU--UGCGUUGCCGgc-------CGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 46808 0.69 0.437805
Target:  5'- -cGCAguCGAACGCAugcuuGCCGGCGCa- -3'
miRNA:   3'- gaUGU--GCUUGCGUugc--CGGCCGCGcu -5'
27928 3' -56.6 NC_005886.2 + 758 0.69 0.437805
Target:  5'- uUAgGCGugcuuGCGCuuguuGCGGCCGGCuugguuGCGAu -3'
miRNA:   3'- gAUgUGCu----UGCGu----UGCCGGCCG------CGCU- -5'
27928 3' -56.6 NC_005886.2 + 13623 0.69 0.428217
Target:  5'- -cGCaACGAGUGCGGCGGauguCGGCGCGu -3'
miRNA:   3'- gaUG-UGCUUGCGUUGCCg---GCCGCGCu -5'
27928 3' -56.6 NC_005886.2 + 36204 0.69 0.408494
Target:  5'- -gGCACGGGCggcaucgGCGGCGGCaCGG-GCGGc -3'
miRNA:   3'- gaUGUGCUUG-------CGUUGCCG-GCCgCGCU- -5'
27928 3' -56.6 NC_005886.2 + 41484 0.7 0.400216
Target:  5'- -gACGcCGAACGCAcCGGCCgcaacguccGGCGCu- -3'
miRNA:   3'- gaUGU-GCUUGCGUuGCCGG---------CCGCGcu -5'
27928 3' -56.6 NC_005886.2 + 9558 0.7 0.399303
Target:  5'- --uUACGAauugACGCAaggcaaagagcaaGCGGCCGGCcgaGCGAu -3'
miRNA:   3'- gauGUGCU----UGCGU-------------UGCCGGCCG---CGCU- -5'
27928 3' -56.6 NC_005886.2 + 32596 0.7 0.391146
Target:  5'- aUGCAgGGuuUGCAGCGGCCGGUGa-- -3'
miRNA:   3'- gAUGUgCUu-GCGUUGCCGGCCGCgcu -5'
27928 3' -56.6 NC_005886.2 + 1134 0.7 0.390246
Target:  5'- cCUGCAUGGGCGUGACGcGCgGgguuaagccucacGCGCGAu -3'
miRNA:   3'- -GAUGUGCUUGCGUUGC-CGgC-------------CGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.