miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27931 5' -51.5 NC_005886.2 + 32623 0.66 0.899177
Target:  5'- cCGcGCGUGA-CGCGGuGCGUgcAGCGCa -3'
miRNA:   3'- -GC-UGCAUUaGCGCC-UGUAguUCGCGc -5'
27931 5' -51.5 NC_005886.2 + 41571 0.66 0.899177
Target:  5'- uCGGCGUcagCGcCGGACGUUGcggccGGUGCGu -3'
miRNA:   3'- -GCUGCAuuaGC-GCCUGUAGU-----UCGCGC- -5'
27931 5' -51.5 NC_005886.2 + 35216 0.66 0.899177
Target:  5'- -cGCGUugaguuUCGCGGGCggCGuGCGCa -3'
miRNA:   3'- gcUGCAuu----AGCGCCUGuaGUuCGCGc -5'
27931 5' -51.5 NC_005886.2 + 43480 0.66 0.899177
Target:  5'- gCGACGgAAUcgaCGCGGAUggCAAGC-CGa -3'
miRNA:   3'- -GCUGCaUUA---GCGCCUGuaGUUCGcGC- -5'
27931 5' -51.5 NC_005886.2 + 7063 0.66 0.899177
Target:  5'- uGACGUAucCGCcGcCAcCGAGCGCGa -3'
miRNA:   3'- gCUGCAUuaGCGcCuGUaGUUCGCGC- -5'
27931 5' -51.5 NC_005886.2 + 24302 0.66 0.897031
Target:  5'- gGGCGcggUGAuUCGUGGcgaagccgggaagaACAUCGGGCGUGg -3'
miRNA:   3'- gCUGC---AUU-AGCGCC--------------UGUAGUUCGCGC- -5'
27931 5' -51.5 NC_005886.2 + 42131 0.66 0.891927
Target:  5'- -cGCGUGGUCGuuGAUGUC--GCGCGg -3'
miRNA:   3'- gcUGCAUUAGCgcCUGUAGuuCGCGC- -5'
27931 5' -51.5 NC_005886.2 + 22960 0.66 0.876601
Target:  5'- aGACGUAGcgGCGGAUgcaAUCAAGguUGCGu -3'
miRNA:   3'- gCUGCAUUagCGCCUG---UAGUUC--GCGC- -5'
27931 5' -51.5 NC_005886.2 + 46004 0.66 0.868535
Target:  5'- gCGACGUGcguagguucGUCaCGGugcgcaACGUCAAGgGCGg -3'
miRNA:   3'- -GCUGCAU---------UAGcGCC------UGUAGUUCgCGC- -5'
27931 5' -51.5 NC_005886.2 + 41963 0.66 0.868535
Target:  5'- uCGGCGcGGggGCGG-CGUCcGGCGCa -3'
miRNA:   3'- -GCUGCaUUagCGCCuGUAGuUCGCGc -5'
27931 5' -51.5 NC_005886.2 + 19512 0.66 0.860209
Target:  5'- gGACGUucaacgagCGUGGuuuCAUCuuGCGCGg -3'
miRNA:   3'- gCUGCAuua-----GCGCCu--GUAGuuCGCGC- -5'
27931 5' -51.5 NC_005886.2 + 31065 0.66 0.859363
Target:  5'- uCGGCGgaaugCGCGGACGUUGuuuugucGGCGUu -3'
miRNA:   3'- -GCUGCauua-GCGCCUGUAGU-------UCGCGc -5'
27931 5' -51.5 NC_005886.2 + 21234 0.67 0.851633
Target:  5'- uCGugGUGGaccgcuaCGCGcGACAacuaUCAGGUGCGu -3'
miRNA:   3'- -GCugCAUUa------GCGC-CUGU----AGUUCGCGC- -5'
27931 5' -51.5 NC_005886.2 + 5601 0.67 0.849012
Target:  5'- gGugGUAAUCGaCGG-UAUCAcgcugguugcgcauAGCGUGu -3'
miRNA:   3'- gCugCAUUAGC-GCCuGUAGU--------------UCGCGC- -5'
27931 5' -51.5 NC_005886.2 + 24530 0.67 0.833761
Target:  5'- uGACaUGGUgCGCGG-CGUCAcuggccGGCGCGc -3'
miRNA:   3'- gCUGcAUUA-GCGCCuGUAGU------UCGCGC- -5'
27931 5' -51.5 NC_005886.2 + 29709 0.68 0.805303
Target:  5'- gGGCGUAccuucgccGUCGCacuucGGGCAUUcgGGGUGCGg -3'
miRNA:   3'- gCUGCAU--------UAGCG-----CCUGUAG--UUCGCGC- -5'
27931 5' -51.5 NC_005886.2 + 26818 0.68 0.805303
Target:  5'- gGACcUGAUCGCGGcguuCGUCGAaCGCa -3'
miRNA:   3'- gCUGcAUUAGCGCCu---GUAGUUcGCGc -5'
27931 5' -51.5 NC_005886.2 + 40290 0.68 0.805303
Target:  5'- -uACGU--UCGCGGucgACAUCGAGCauGCGa -3'
miRNA:   3'- gcUGCAuuAGCGCC---UGUAGUUCG--CGC- -5'
27931 5' -51.5 NC_005886.2 + 38288 0.68 0.775124
Target:  5'- cCGACGUG--CGCGGGCGUgAugagaacGCGCu -3'
miRNA:   3'- -GCUGCAUuaGCGCCUGUAgUu------CGCGc -5'
27931 5' -51.5 NC_005886.2 + 25346 0.68 0.764736
Target:  5'- gGAUGaaauuGUCGCGGAUGUCGccGCGCu -3'
miRNA:   3'- gCUGCau---UAGCGCCUGUAGUu-CGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.