miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2794 5' -51.1 NC_001491.2 + 86971 0.66 0.990861
Target:  5'- -gUAGCGCcAGGGCcuuggGGCGAgucAGGUa -3'
miRNA:   3'- cgAUUGCGaUCCCGa----UCGUUac-UCCG- -5'
2794 5' -51.1 NC_001491.2 + 67790 0.66 0.990861
Target:  5'- aGCgUGACGCcAGGGg-GGCGAgcgGGGGa -3'
miRNA:   3'- -CG-AUUGCGaUCCCgaUCGUUa--CUCCg -5'
2794 5' -51.1 NC_001491.2 + 52949 0.66 0.989546
Target:  5'- uGCU-GCGCgacuGGCUGGCcAUGcgaaAGGCg -3'
miRNA:   3'- -CGAuUGCGauc-CCGAUCGuUAC----UCCG- -5'
2794 5' -51.1 NC_001491.2 + 140478 0.66 0.989546
Target:  5'- aGCUAugGgaAGGGUggGGUGggGGGGa -3'
miRNA:   3'- -CGAUugCgaUCCCGa-UCGUuaCUCCg -5'
2794 5' -51.1 NC_001491.2 + 107140 0.66 0.988086
Target:  5'- uGCUuaGugGgUGGGGgUGGCcAGUaGAGGUg -3'
miRNA:   3'- -CGA--UugCgAUCCCgAUCG-UUA-CUCCG- -5'
2794 5' -51.1 NC_001491.2 + 99207 0.66 0.986474
Target:  5'- --gAGCGUccAGGGUacgGGCGAUGGGGa -3'
miRNA:   3'- cgaUUGCGa-UCCCGa--UCGUUACUCCg -5'
2794 5' -51.1 NC_001491.2 + 83116 0.66 0.986474
Target:  5'- --gGGCGUUGGGGggAG-GGUGAGGUu -3'
miRNA:   3'- cgaUUGCGAUCCCgaUCgUUACUCCG- -5'
2794 5' -51.1 NC_001491.2 + 127474 0.66 0.9847
Target:  5'- gGUUGACGCguugaaagcAGGGgUAGCGcGUGuaGGGCu -3'
miRNA:   3'- -CGAUUGCGa--------UCCCgAUCGU-UAC--UCCG- -5'
2794 5' -51.1 NC_001491.2 + 133585 0.66 0.9847
Target:  5'- -gUAGCGCUAGGGgUuugAGUg--GAGGUc -3'
miRNA:   3'- cgAUUGCGAUCCCgA---UCGuuaCUCCG- -5'
2794 5' -51.1 NC_001491.2 + 130511 0.67 0.982753
Target:  5'- aGCUugggguACGC-GGGGaaGGUGAUGGGGUg -3'
miRNA:   3'- -CGAu-----UGCGaUCCCgaUCGUUACUCCG- -5'
2794 5' -51.1 NC_001491.2 + 137503 0.67 0.982753
Target:  5'- aGCUGGuCGaccaggGGGGCgaggGGCuguuGUGGGGUa -3'
miRNA:   3'- -CGAUU-GCga----UCCCGa---UCGu---UACUCCG- -5'
2794 5' -51.1 NC_001491.2 + 122266 0.67 0.982753
Target:  5'- cGCUuuugguggGACGCUcacccuuggGGGGUUGGCGcuUGcGGCg -3'
miRNA:   3'- -CGA--------UUGCGA---------UCCCGAUCGUu-ACuCCG- -5'
2794 5' -51.1 NC_001491.2 + 86841 0.67 0.97307
Target:  5'- cUUAACGCgGGGaucGCU-GCGuAUGAGGCg -3'
miRNA:   3'- cGAUUGCGaUCC---CGAuCGU-UACUCCG- -5'
2794 5' -51.1 NC_001491.2 + 14130 0.68 0.966971
Target:  5'- gGCUauaGugGCUGGGaGUgGGCAGgcuaucGAGGCc -3'
miRNA:   3'- -CGA---UugCGAUCC-CGaUCGUUa-----CUCCG- -5'
2794 5' -51.1 NC_001491.2 + 31013 0.68 0.965979
Target:  5'- aGCUGuGCGCccUGGGGCU-GCAgucugcguuaaaguAUGAGGa -3'
miRNA:   3'- -CGAU-UGCG--AUCCCGAuCGU--------------UACUCCg -5'
2794 5' -51.1 NC_001491.2 + 82662 0.69 0.951976
Target:  5'- cGCUccGCGCU-GGGCcugGGCGuuUGGGGUg -3'
miRNA:   3'- -CGAu-UGCGAuCCCGa--UCGUu-ACUCCG- -5'
2794 5' -51.1 NC_001491.2 + 147015 0.69 0.947612
Target:  5'- gGCgagGACGaugAGGGCUgcugggaccgAGuCGGUGGGGCc -3'
miRNA:   3'- -CGa--UUGCga-UCCCGA----------UC-GUUACUCCG- -5'
2794 5' -51.1 NC_001491.2 + 66506 0.69 0.947612
Target:  5'- uGgUGGCGCgacgacggagAGaGGCUGGCAuagaGGGGCa -3'
miRNA:   3'- -CgAUUGCGa---------UC-CCGAUCGUua--CUCCG- -5'
2794 5' -51.1 NC_001491.2 + 39786 0.69 0.932983
Target:  5'- aCUccCGCUAGGGCg---GAUGAGGUg -3'
miRNA:   3'- cGAuuGCGAUCCCGaucgUUACUCCG- -5'
2794 5' -51.1 NC_001491.2 + 122209 0.7 0.921931
Target:  5'- cGCUAGCGCggguugUAGGGUggUGGUuguuggugGGGGCa -3'
miRNA:   3'- -CGAUUGCG------AUCCCG--AUCGuua-----CUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.