miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27955 5' -55.3 NC_005886.2 + 15112 0.66 0.706113
Target:  5'- cGCGCGaucauucaUCCGAccgaCGAUUGCcGCGCAg-- -3'
miRNA:   3'- -CGCGU--------AGGCUa---GCUGACG-CGCGUagc -5'
27955 5' -55.3 NC_005886.2 + 24561 0.66 0.69962
Target:  5'- gGUGUAUCCGAcaaaucucgCGACauggguuugacauggUGCGCgGCGUCa -3'
miRNA:   3'- -CGCGUAGGCUa--------GCUG---------------ACGCG-CGUAGc -5'
27955 5' -55.3 NC_005886.2 + 43106 0.66 0.695277
Target:  5'- aGCGauCGUCCac-CGGCagggcuuaagguUGCGCGCGUCGa -3'
miRNA:   3'- -CGC--GUAGGcuaGCUG------------ACGCGCGUAGC- -5'
27955 5' -55.3 NC_005886.2 + 47039 0.66 0.68438
Target:  5'- aGCGCGccggCCaGAUCGGCaaUGCGaaugauCGCAUCa -3'
miRNA:   3'- -CGCGUa---GG-CUAGCUG--ACGC------GCGUAGc -5'
27955 5' -55.3 NC_005886.2 + 41871 0.66 0.673433
Target:  5'- gGCGCGUUCGGguugaUCGcCUGCGUauGCAUg- -3'
miRNA:   3'- -CGCGUAGGCU-----AGCuGACGCG--CGUAgc -5'
27955 5' -55.3 NC_005886.2 + 45928 0.66 0.673433
Target:  5'- cGCGCGaucugcgCCGAUgCGGCUauCGCGUAUCu -3'
miRNA:   3'- -CGCGUa------GGCUA-GCUGAc-GCGCGUAGc -5'
27955 5' -55.3 NC_005886.2 + 28917 0.66 0.662446
Target:  5'- aGUGCGUCUGcgCGAacuCUGCGacauCAUCGa -3'
miRNA:   3'- -CGCGUAGGCuaGCU---GACGCgc--GUAGC- -5'
27955 5' -55.3 NC_005886.2 + 32916 0.66 0.661346
Target:  5'- cCGCA-CCGAgcggaucaugcguUCGuCUGCGCuGUAUCGu -3'
miRNA:   3'- cGCGUaGGCU-------------AGCuGACGCG-CGUAGC- -5'
27955 5' -55.3 NC_005886.2 + 46966 0.67 0.651431
Target:  5'- uCGCAUugCCGAUCuGGCcgGCGCGCuaaAUCu -3'
miRNA:   3'- cGCGUA--GGCUAG-CUGa-CGCGCG---UAGc -5'
27955 5' -55.3 NC_005886.2 + 13080 0.67 0.651431
Target:  5'- uGCGCAgaauuccaaCCGAgCaAUUGCGCGaCAUCGa -3'
miRNA:   3'- -CGCGUa--------GGCUaGcUGACGCGC-GUAGC- -5'
27955 5' -55.3 NC_005886.2 + 34974 0.67 0.651431
Target:  5'- aCGCuaacgAUCUGAUCGACUGgaauagcacUGCGCGUUu -3'
miRNA:   3'- cGCG-----UAGGCUAGCUGAC---------GCGCGUAGc -5'
27955 5' -55.3 NC_005886.2 + 15748 0.67 0.650328
Target:  5'- uGCuGCAUCCGGgucuucuUCGGC-GCGCuccGCAUCc -3'
miRNA:   3'- -CG-CGUAGGCU-------AGCUGaCGCG---CGUAGc -5'
27955 5' -55.3 NC_005886.2 + 36964 0.67 0.640398
Target:  5'- aCGUAUcCCGAaaGAcCUGCGCGCcgCa -3'
miRNA:   3'- cGCGUA-GGCUagCU-GACGCGCGuaGc -5'
27955 5' -55.3 NC_005886.2 + 23873 0.67 0.640398
Target:  5'- --aCAUCCGcAUCGAUcGCG-GCAUCGa -3'
miRNA:   3'- cgcGUAGGC-UAGCUGaCGCgCGUAGC- -5'
27955 5' -55.3 NC_005886.2 + 43206 0.67 0.640398
Target:  5'- gGCGCGcucUUCG-UCGAC-GCGCGCAa-- -3'
miRNA:   3'- -CGCGU---AGGCuAGCUGaCGCGCGUagc -5'
27955 5' -55.3 NC_005886.2 + 15407 0.67 0.637086
Target:  5'- gGCGCAagcgugCUGAUCGACaccuugucaaucguUGCGCuCGUCa -3'
miRNA:   3'- -CGCGUa-----GGCUAGCUG--------------ACGCGcGUAGc -5'
27955 5' -55.3 NC_005886.2 + 10481 0.67 0.61832
Target:  5'- cGCuuCAUUCGAUCGAUauguucgucaaGUGCGCGUCGa -3'
miRNA:   3'- -CGc-GUAGGCUAGCUGa----------CGCGCGUAGC- -5'
27955 5' -55.3 NC_005886.2 + 24597 0.67 0.607294
Target:  5'- uGCGCGUUUuacuUCGAUgGCGCGCGgaUCGa -3'
miRNA:   3'- -CGCGUAGGcu--AGCUGaCGCGCGU--AGC- -5'
27955 5' -55.3 NC_005886.2 + 30017 0.67 0.607294
Target:  5'- uCGCugAUCCGGgugaGAUUGUGCaGCAUCGu -3'
miRNA:   3'- cGCG--UAGGCUag--CUGACGCG-CGUAGC- -5'
27955 5' -55.3 NC_005886.2 + 251 0.67 0.606193
Target:  5'- gGCGCAUCCGA-----UGUGCGCAcaauucaUCGa -3'
miRNA:   3'- -CGCGUAGGCUagcugACGCGCGU-------AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.