Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27957 | 5' | -55.4 | NC_005886.2 | + | 35137 | 0.66 | 0.63866 |
Target: 5'- cCAGUGCGcacgcCGCCCGCGaaacucaacgcguguACGUUCGaaCCa -3' miRNA: 3'- cGUCACGCc----GUGGGCGU---------------UGUAAGC--GG- -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 36180 | 0.66 | 0.68953 |
Target: 5'- gGCGGcacggGCGGCAUCgGCGGCGgcacgggCGgCa -3' miRNA: 3'- -CGUCa----CGCCGUGGgCGUUGUaa-----GCgG- -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 13126 | 0.66 | 0.634216 |
Target: 5'- -aGGUGCGucGUAUaUCGCAGCAU-CGCCg -3' miRNA: 3'- cgUCACGC--CGUG-GGCGUUGUAaGCGG- -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 4002 | 0.66 | 0.677433 |
Target: 5'- -gAGUGCGcaauacuGCGCCCGUucccGCAgcUUGCCa -3' miRNA: 3'- cgUCACGC-------CGUGGGCGu---UGUa-AGCGG- -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 46244 | 0.66 | 0.630882 |
Target: 5'- uGCAGUugccggaagacuucGCGGUuCCCGCAugGgUCGaCUa -3' miRNA: 3'- -CGUCA--------------CGCCGuGGGCGUugUaAGC-GG- -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 44401 | 0.66 | 0.645325 |
Target: 5'- cGCAcauuCGGUAUCCGCAACAacUUUGCg -3' miRNA: 3'- -CGUcac-GCCGUGGGCGUUGU--AAGCGg -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 22745 | 0.66 | 0.641993 |
Target: 5'- -aGGUGCaacuaugaaauucauCAUcgCCGCAGCAUUCGCCg -3' miRNA: 3'- cgUCACGcc-------------GUG--GGCGUUGUAAGCGG- -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 32017 | 0.66 | 0.667495 |
Target: 5'- -gGGUGCuGCGCUCGCAcCGgaUCGCa -3' miRNA: 3'- cgUCACGcCGUGGGCGUuGUa-AGCGg -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 14392 | 0.66 | 0.656421 |
Target: 5'- aCAGuUGgGGCA-CCGCAACGUgCGUg -3' miRNA: 3'- cGUC-ACgCCGUgGGCGUUGUAaGCGg -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 36231 | 0.66 | 0.68953 |
Target: 5'- gGCGGcacggGCGGCAUCgGCGGCGgcacgggCGgCg -3' miRNA: 3'- -CGUCa----CGCCGUGGgCGUUGUaa-----GCgG- -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 29741 | 0.66 | 0.678535 |
Target: 5'- cGgGGUGCGGCGa----GGCAUUCGCUu -3' miRNA: 3'- -CgUCACGCCGUgggcgUUGUAAGCGG- -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 38643 | 0.67 | 0.600917 |
Target: 5'- gGUAGaUGCGGCGCggGCGACGUugagaaucaccUCGUCc -3' miRNA: 3'- -CGUC-ACGCCGUGggCGUUGUA-----------AGCGG- -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 16726 | 0.67 | 0.623105 |
Target: 5'- uGCGG-GCGGCucCCCGCugUGggCGCa -3' miRNA: 3'- -CGUCaCGCCGu-GGGCGuuGUaaGCGg -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 3447 | 0.67 | 0.612002 |
Target: 5'- gGCGGUGCaGGaACCgGC-ACGaUUGCCg -3' miRNA: 3'- -CGUCACG-CCgUGGgCGuUGUaAGCGG- -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 2092 | 0.67 | 0.589859 |
Target: 5'- ----cGcCGGCACCuCGCAACGccUGCCg -3' miRNA: 3'- cgucaC-GCCGUGG-GCGUUGUaaGCGG- -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 26104 | 0.68 | 0.513929 |
Target: 5'- cCGGUGacaucaCGCCCGCAGCGUaaCGCCg -3' miRNA: 3'- cGUCACgcc---GUGGGCGUUGUAa-GCGG- -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 41999 | 0.68 | 0.555848 |
Target: 5'- cGUAG-GCGGUcuugcugGCCuCGCAACAcagccCGCCa -3' miRNA: 3'- -CGUCaCGCCG-------UGG-GCGUUGUaa---GCGG- -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 16677 | 0.68 | 0.535282 |
Target: 5'- cGCAccGUuCGGCA-CUGCGACGUaCGCCg -3' miRNA: 3'- -CGU--CAcGCCGUgGGCGUUGUAaGCGG- -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 14904 | 0.68 | 0.513929 |
Target: 5'- uGCgAGUGUGGCAUCaacaucaccacgUGCAACGaUCGCg -3' miRNA: 3'- -CG-UCACGCCGUGG------------GCGUUGUaAGCGg -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 31693 | 0.68 | 0.546075 |
Target: 5'- gGCAG-GCGGUcCCCGUGaagaccuuguGCGUUUGCg -3' miRNA: 3'- -CGUCaCGCCGuGGGCGU----------UGUAAGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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