Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27957 | 5' | -55.4 | NC_005886.2 | + | 430 | 0.8 | 0.101999 |
Target: 5'- -aGGUGCaacaGUGCCCGCAACcgUCGCCg -3' miRNA: 3'- cgUCACGc---CGUGGGCGUUGuaAGCGG- -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 2092 | 0.67 | 0.589859 |
Target: 5'- ----cGcCGGCACCuCGCAACGccUGCCg -3' miRNA: 3'- cgucaC-GCCGUGG-GCGUUGUaaGCGG- -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 3447 | 0.67 | 0.612002 |
Target: 5'- gGCGGUGCaGGaACCgGC-ACGaUUGCCg -3' miRNA: 3'- -CGUCACG-CCgUGGgCGuUGUaAGCGG- -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 3648 | 1.13 | 0.000441 |
Target: 5'- uGCAGUGCGGCACCCGCAACAUUCGCCc -3' miRNA: 3'- -CGUCACGCCGUGGGCGUUGUAAGCGG- -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 4002 | 0.66 | 0.677433 |
Target: 5'- -gAGUGCGcaauacuGCGCCCGUucccGCAgcUUGCCa -3' miRNA: 3'- cgUCACGC-------CGUGGGCGu---UGUa-AGCGG- -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 5283 | 0.72 | 0.35059 |
Target: 5'- aCGGccUGCGGaacaGCuuGCGACAagUUCGCCg -3' miRNA: 3'- cGUC--ACGCCg---UGggCGUUGU--AAGCGG- -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 13126 | 0.66 | 0.634216 |
Target: 5'- -aGGUGCGucGUAUaUCGCAGCAU-CGCCg -3' miRNA: 3'- cgUCACGC--CGUG-GGCGUUGUAaGCGG- -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 13464 | 0.68 | 0.524564 |
Target: 5'- gGUGGUGCGaagaaagccgccGCGCUCGCAACGcugcaaGCCg -3' miRNA: 3'- -CGUCACGC------------CGUGGGCGUUGUaag---CGG- -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 13716 | 0.68 | 0.535282 |
Target: 5'- -gGGUGUGGCugC-GCAACAgcagaUCGCg -3' miRNA: 3'- cgUCACGCCGugGgCGUUGUa----AGCGg -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 14392 | 0.66 | 0.656421 |
Target: 5'- aCAGuUGgGGCA-CCGCAACGUgCGUg -3' miRNA: 3'- cGUC-ACgCCGUgGGCGUUGUAaGCGg -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 14904 | 0.68 | 0.513929 |
Target: 5'- uGCgAGUGUGGCAUCaacaucaccacgUGCAACGaUCGCg -3' miRNA: 3'- -CG-UCACGCCGUGG------------GCGUUGUaAGCGg -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 16677 | 0.68 | 0.535282 |
Target: 5'- cGCAccGUuCGGCA-CUGCGACGUaCGCCg -3' miRNA: 3'- -CGU--CAcGCCGUgGGCGUUGUAaGCGG- -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 16726 | 0.67 | 0.623105 |
Target: 5'- uGCGG-GCGGCucCCCGCugUGggCGCa -3' miRNA: 3'- -CGUCaCGCCGu-GGGCGuuGUaaGCGg -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 17484 | 0.74 | 0.239353 |
Target: 5'- gGCAGUGCuGCACCCggcgucacggauuGCAACG--UGCCa -3' miRNA: 3'- -CGUCACGcCGUGGG-------------CGUUGUaaGCGG- -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 20430 | 0.68 | 0.535282 |
Target: 5'- cGC-GUGaGGCACgUCGCGACAUccUCGCa -3' miRNA: 3'- -CGuCACgCCGUG-GGCGUUGUA--AGCGg -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 22745 | 0.66 | 0.641993 |
Target: 5'- -aGGUGCaacuaugaaauucauCAUcgCCGCAGCAUUCGCCg -3' miRNA: 3'- cgUCACGcc-------------GUG--GGCGUUGUAAGCGG- -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 22818 | 0.69 | 0.462206 |
Target: 5'- cGCGGUGa-GCACCgGCAcGCuaUCGCCc -3' miRNA: 3'- -CGUCACgcCGUGGgCGU-UGuaAGCGG- -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 26104 | 0.68 | 0.513929 |
Target: 5'- cCGGUGacaucaCGCCCGCAGCGUaaCGCCg -3' miRNA: 3'- cGUCACgcc---GUGGGCGUUGUAa-GCGG- -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 26466 | 0.69 | 0.482583 |
Target: 5'- uGCAGUGCGGCAUgUGC--CGUUUGaCUc -3' miRNA: 3'- -CGUCACGCCGUGgGCGuuGUAAGC-GG- -5' |
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27957 | 5' | -55.4 | NC_005886.2 | + | 27210 | 0.69 | 0.482583 |
Target: 5'- uGCAGauaGCGGCAgCCGCuAACGccuuUUCGUg -3' miRNA: 3'- -CGUCa--CGCCGUgGGCG-UUGU----AAGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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