miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27957 5' -55.4 NC_005886.2 + 3648 1.13 0.000441
Target:  5'- uGCAGUGCGGCACCCGCAACAUUCGCCc -3'
miRNA:   3'- -CGUCACGCCGUGGGCGUUGUAAGCGG- -5'
27957 5' -55.4 NC_005886.2 + 41999 0.68 0.555848
Target:  5'- cGUAG-GCGGUcuugcugGCCuCGCAACAcagccCGCCa -3'
miRNA:   3'- -CGUCaCGCCG-------UGG-GCGUUGUaa---GCGG- -5'
27957 5' -55.4 NC_005886.2 + 38643 0.67 0.600917
Target:  5'- gGUAGaUGCGGCGCggGCGACGUugagaaucaccUCGUCc -3'
miRNA:   3'- -CGUC-ACGCCGUGggCGUUGUA-----------AGCGG- -5'
27957 5' -55.4 NC_005886.2 + 46244 0.66 0.630882
Target:  5'- uGCAGUugccggaagacuucGCGGUuCCCGCAugGgUCGaCUa -3'
miRNA:   3'- -CGUCA--------------CGCCGuGGGCGUugUaAGC-GG- -5'
27957 5' -55.4 NC_005886.2 + 35137 0.66 0.63866
Target:  5'- cCAGUGCGcacgcCGCCCGCGaaacucaacgcguguACGUUCGaaCCa -3'
miRNA:   3'- cGUCACGCc----GUGGGCGU---------------UGUAAGC--GG- -5'
27957 5' -55.4 NC_005886.2 + 4002 0.66 0.677433
Target:  5'- -gAGUGCGcaauacuGCGCCCGUucccGCAgcUUGCCa -3'
miRNA:   3'- cgUCACGC-------CGUGGGCGu---UGUa-AGCGG- -5'
27957 5' -55.4 NC_005886.2 + 29741 0.66 0.678535
Target:  5'- cGgGGUGCGGCGa----GGCAUUCGCUu -3'
miRNA:   3'- -CgUCACGCCGUgggcgUUGUAAGCGG- -5'
27957 5' -55.4 NC_005886.2 + 36180 0.66 0.68953
Target:  5'- gGCGGcacggGCGGCAUCgGCGGCGgcacgggCGgCa -3'
miRNA:   3'- -CGUCa----CGCCGUGGgCGUUGUaa-----GCgG- -5'
27957 5' -55.4 NC_005886.2 + 36231 0.66 0.68953
Target:  5'- gGCGGcacggGCGGCAUCgGCGGCGgcacgggCGgCg -3'
miRNA:   3'- -CGUCa----CGCCGUGGgCGUUGUaa-----GCgG- -5'
27957 5' -55.4 NC_005886.2 + 16677 0.68 0.535282
Target:  5'- cGCAccGUuCGGCA-CUGCGACGUaCGCCg -3'
miRNA:   3'- -CGU--CAcGCCGUgGGCGUUGUAaGCGG- -5'
27957 5' -55.4 NC_005886.2 + 14904 0.68 0.513929
Target:  5'- uGCgAGUGUGGCAUCaacaucaccacgUGCAACGaUCGCg -3'
miRNA:   3'- -CG-UCACGCCGUGG------------GCGUUGUaAGCGg -5'
27957 5' -55.4 NC_005886.2 + 27210 0.69 0.482583
Target:  5'- uGCAGauaGCGGCAgCCGCuAACGccuuUUCGUg -3'
miRNA:   3'- -CGUCa--CGCCGUgGGCG-UUGU----AAGCGg -5'
27957 5' -55.4 NC_005886.2 + 42939 0.76 0.178676
Target:  5'- aGCAGuUGCGGCAUuacgaaaugaaaCCGgGGCGUUCGCg -3'
miRNA:   3'- -CGUC-ACGCCGUG------------GGCgUUGUAAGCGg -5'
27957 5' -55.4 NC_005886.2 + 17484 0.74 0.239353
Target:  5'- gGCAGUGCuGCACCCggcgucacggauuGCAACG--UGCCa -3'
miRNA:   3'- -CGUCACGcCGUGGG-------------CGUUGUaaGCGG- -5'
27957 5' -55.4 NC_005886.2 + 38815 0.72 0.31008
Target:  5'- cGCAGUGCc-CGCagCGCAGCggUCGCCg -3'
miRNA:   3'- -CGUCACGccGUGg-GCGUUGuaAGCGG- -5'
27957 5' -55.4 NC_005886.2 + 5283 0.72 0.35059
Target:  5'- aCGGccUGCGGaacaGCuuGCGACAagUUCGCCg -3'
miRNA:   3'- cGUC--ACGCCg---UGggCGUUGU--AAGCGG- -5'
27957 5' -55.4 NC_005886.2 + 36300 0.71 0.394722
Target:  5'- gGCGGcaucgGCGGCAUCgGCGGCAU-CGgCg -3'
miRNA:   3'- -CGUCa----CGCCGUGGgCGUUGUAaGCgG- -5'
27957 5' -55.4 NC_005886.2 + 38521 0.7 0.452188
Target:  5'- aGCaAGUGCGGCgcgGCCgGCAACAccaaGCa -3'
miRNA:   3'- -CG-UCACGCCG---UGGgCGUUGUaag-CGg -5'
27957 5' -55.4 NC_005886.2 + 22818 0.69 0.462206
Target:  5'- cGCGGUGa-GCACCgGCAcGCuaUCGCCc -3'
miRNA:   3'- -CGUCACgcCGUGGgCGU-UGuaAGCGG- -5'
27957 5' -55.4 NC_005886.2 + 26466 0.69 0.482583
Target:  5'- uGCAGUGCGGCAUgUGC--CGUUUGaCUc -3'
miRNA:   3'- -CGUCACGCCGUGgGCGuuGUAAGC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.