miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27982 5' -50.7 NC_005886.2 + 28834 0.66 0.918426
Target:  5'- gCGGaUCGAUGAUGucgcagaguuCGCGCaGACGCa -3'
miRNA:   3'- -GUC-AGCUAUUGCuu--------GCGCGcUUGCGa -5'
27982 5' -50.7 NC_005886.2 + 19224 0.66 0.918426
Target:  5'- gCAGaUGGUAuuGCGAuggacgaGCGUGAACGCg -3'
miRNA:   3'- -GUCaGCUAU--UGCUug-----CGCGCUUGCGa -5'
27982 5' -50.7 NC_005886.2 + 6561 0.66 0.911931
Target:  5'- gCGGUCGGccaaaacuGCGucacuGCGaUGCGAGCGCa -3'
miRNA:   3'- -GUCAGCUau------UGCu----UGC-GCGCUUGCGa -5'
27982 5' -50.7 NC_005886.2 + 43141 0.66 0.905141
Target:  5'- -cGUCGAcGAaGAGCGCGCc-GCGCg -3'
miRNA:   3'- guCAGCUaUUgCUUGCGCGcuUGCGa -5'
27982 5' -50.7 NC_005886.2 + 13643 0.66 0.903047
Target:  5'- uCGGUCGAUcggcugaucaccgcAACGAGUGCGgCGGAUGUc -3'
miRNA:   3'- -GUCAGCUA--------------UUGCUUGCGC-GCUUGCGa -5'
27982 5' -50.7 NC_005886.2 + 7335 0.66 0.89806
Target:  5'- cCGGcCGAUGACGGuaGCGCaGCcGGCGUa -3'
miRNA:   3'- -GUCaGCUAUUGCU--UGCG-CGcUUGCGa -5'
27982 5' -50.7 NC_005886.2 + 46277 0.66 0.89806
Target:  5'- gGGUCGAcuaugGGCGGuacgaggaagaaGCGCGCGAaauguuGCGUa -3'
miRNA:   3'- gUCAGCUa----UUGCU------------UGCGCGCU------UGCGa -5'
27982 5' -50.7 NC_005886.2 + 42135 0.66 0.89806
Target:  5'- uGGUCGuUGAUGu-CGCGCGGACa-- -3'
miRNA:   3'- gUCAGCuAUUGCuuGCGCGCUUGcga -5'
27982 5' -50.7 NC_005886.2 + 32296 0.66 0.89806
Target:  5'- cCAGUgGG--ACgGAAUGCGCugGAACGCUg -3'
miRNA:   3'- -GUCAgCUauUG-CUUGCGCG--CUUGCGA- -5'
27982 5' -50.7 NC_005886.2 + 152 0.66 0.89806
Target:  5'- -uGUCGGUGAUGAuu-CGCGAacauugGCGCUg -3'
miRNA:   3'- guCAGCUAUUGCUugcGCGCU------UGCGA- -5'
27982 5' -50.7 NC_005886.2 + 21115 0.66 0.890691
Target:  5'- uCAGUUGGUcuGCGcuauCGCGCGuACGCc -3'
miRNA:   3'- -GUCAGCUAu-UGCuu--GCGCGCuUGCGa -5'
27982 5' -50.7 NC_005886.2 + 25172 0.67 0.858448
Target:  5'- -cGUCGAUGcCGuucACGCGaugcaCGAACGCUu -3'
miRNA:   3'- guCAGCUAUuGCu--UGCGC-----GCUUGCGA- -5'
27982 5' -50.7 NC_005886.2 + 20484 0.67 0.858448
Target:  5'- gAGUCGAUAGCaacacguuACGCGC-AGCGUc -3'
miRNA:   3'- gUCAGCUAUUGcu------UGCGCGcUUGCGa -5'
27982 5' -50.7 NC_005886.2 + 34672 0.67 0.849731
Target:  5'- aCGGUCGcAUGACGuucAACGCuuacGCGGACGaCa -3'
miRNA:   3'- -GUCAGC-UAUUGC---UUGCG----CGCUUGC-Ga -5'
27982 5' -50.7 NC_005886.2 + 40283 0.68 0.840768
Target:  5'- gCGGUCGAcauCGAGCaUGCGAcGCGCa -3'
miRNA:   3'- -GUCAGCUauuGCUUGcGCGCU-UGCGa -5'
27982 5' -50.7 NC_005886.2 + 26815 0.68 0.831569
Target:  5'- uGGUUGAUGAaguCGAACaGCGCGAA-GCc -3'
miRNA:   3'- gUCAGCUAUU---GCUUG-CGCGCUUgCGa -5'
27982 5' -50.7 NC_005886.2 + 4131 0.68 0.822145
Target:  5'- -cGUCGAgcaaauCGGGCGCGCuuACGUUg -3'
miRNA:   3'- guCAGCUauu---GCUUGCGCGcuUGCGA- -5'
27982 5' -50.7 NC_005886.2 + 24771 0.68 0.822145
Target:  5'- --cUCGcc-GCGuuGCGCGCGGACGCg -3'
miRNA:   3'- gucAGCuauUGCu-UGCGCGCUUGCGa -5'
27982 5' -50.7 NC_005886.2 + 10832 0.68 0.816386
Target:  5'- uCAGUUGAUGucGCGAgugcagccgcuuguuGCuucaGCGCGAACGUa -3'
miRNA:   3'- -GUCAGCUAU--UGCU---------------UG----CGCGCUUGCGa -5'
27982 5' -50.7 NC_005886.2 + 6833 0.68 0.812505
Target:  5'- -uGUCGAgcGCGA---UGCGAACGCUa -3'
miRNA:   3'- guCAGCUauUGCUugcGCGCUUGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.