miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27983 5' -54.4 NC_005886.2 + 32589 1.12 0.000737
Target:  5'- gUGACCGUAACGAGCGACGCAACCGGCu -3'
miRNA:   3'- -ACUGGCAUUGCUCGCUGCGUUGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 7334 0.82 0.092747
Target:  5'- cGGCCGaUGACG-GUaGCGCAGCCGGCg -3'
miRNA:   3'- aCUGGC-AUUGCuCGcUGCGUUGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 38505 0.76 0.237551
Target:  5'- cGGCCGcgcuugGAUcagcaaGuGCGGCGCGGCCGGCa -3'
miRNA:   3'- aCUGGCa-----UUG------CuCGCUGCGUUGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 11945 0.76 0.243853
Target:  5'- -aACCGgguCGGGCGugGCAaacgGCCGGUg -3'
miRNA:   3'- acUGGCauuGCUCGCugCGU----UGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 41357 0.74 0.299344
Target:  5'- -uGCCGUuuCGGGCGuCGCG-CCGGUg -3'
miRNA:   3'- acUGGCAuuGCUCGCuGCGUuGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 7097 0.74 0.30693
Target:  5'- -cACCGUGGCGAuCGACGCAcguugcACgGGCu -3'
miRNA:   3'- acUGGCAUUGCUcGCUGCGU------UGgCCG- -5'
27983 5' -54.4 NC_005886.2 + 43754 0.73 0.330564
Target:  5'- cGGCCGUGACGc-UGGCGCAGCguugGGCg -3'
miRNA:   3'- aCUGGCAUUGCucGCUGCGUUGg---CCG- -5'
27983 5' -54.4 NC_005886.2 + 5560 0.73 0.342044
Target:  5'- cGcCCGUAACGuuuucccggaacgcaAGCGACGCuacACCGGg -3'
miRNA:   3'- aCuGGCAUUGC---------------UCGCUGCGu--UGGCCg -5'
27983 5' -54.4 NC_005886.2 + 13334 0.73 0.347051
Target:  5'- cGGauGUAGCGAGCGAacUGCAAaCGGCa -3'
miRNA:   3'- aCUggCAUUGCUCGCU--GCGUUgGCCG- -5'
27983 5' -54.4 NC_005886.2 + 17775 0.72 0.399956
Target:  5'- aGGCgGUA-CGGGCG-UGCuuGCCGGCa -3'
miRNA:   3'- aCUGgCAUuGCUCGCuGCGu-UGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 16677 0.72 0.4187
Target:  5'- cGcACCGUucGGCacuGCGACGUAcGCCGGCa -3'
miRNA:   3'- aC-UGGCA--UUGcu-CGCUGCGU-UGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 26882 0.71 0.42827
Target:  5'- cUGACCGUGuGCGAucGCGugaaGCGuCAGCCGcGCa -3'
miRNA:   3'- -ACUGGCAU-UGCU--CGC----UGC-GUUGGC-CG- -5'
27983 5' -54.4 NC_005886.2 + 12385 0.71 0.44779
Target:  5'- cUGACCGggGAUGAuaccGCGugGCAAaaGGUg -3'
miRNA:   3'- -ACUGGCa-UUGCU----CGCugCGUUggCCG- -5'
27983 5' -54.4 NC_005886.2 + 38279 0.71 0.457734
Target:  5'- cGAUCG-AACGAuGCGcACGCGA-CGGCg -3'
miRNA:   3'- aCUGGCaUUGCU-CGC-UGCGUUgGCCG- -5'
27983 5' -54.4 NC_005886.2 + 26996 0.7 0.488248
Target:  5'- cGcACCG-GGCG-GCacuACGCGACCGGCa -3'
miRNA:   3'- aC-UGGCaUUGCuCGc--UGCGUUGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 28779 0.7 0.498632
Target:  5'- aUGGCaCG-AACGGuGCGACGCGuaucaGCgGGCa -3'
miRNA:   3'- -ACUG-GCaUUGCU-CGCUGCGU-----UGgCCG- -5'
27983 5' -54.4 NC_005886.2 + 16843 0.7 0.513331
Target:  5'- cGGCuCGaacgcgcuucuuCGAGCGGCGCAacuugcaaACCGGCc -3'
miRNA:   3'- aCUG-GCauu---------GCUCGCUGCGU--------UGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 18529 0.7 0.534629
Target:  5'- aGACCG--GCGAGCaGCGUAGCgacacgcuucaccuuCGGCg -3'
miRNA:   3'- aCUGGCauUGCUCGcUGCGUUG---------------GCCG- -5'
27983 5' -54.4 NC_005886.2 + 20875 0.69 0.54108
Target:  5'- cGAauaCGUuuGCGAa-GAUGCGACCGGCa -3'
miRNA:   3'- aCUg--GCAu-UGCUcgCUGCGUUGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 24281 0.69 0.549721
Target:  5'- -aGCCGggaagaacauCGGGCGugGUGGCCGGg -3'
miRNA:   3'- acUGGCauu-------GCUCGCugCGUUGGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.