miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27983 5' -54.4 NC_005886.2 + 1484 0.67 0.677561
Target:  5'- cGGCCc-GACGAGCGccaguggcaccuuaaGCGUcgauuuGCCGGCg -3'
miRNA:   3'- aCUGGcaUUGCUCGC---------------UGCGu-----UGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 1535 0.67 0.673158
Target:  5'- gGGCCGaUAugGGGCaucGugGCGugCguGGCg -3'
miRNA:   3'- aCUGGC-AUugCUCG---CugCGUugG--CCG- -5'
27983 5' -54.4 NC_005886.2 + 1604 0.68 0.63998
Target:  5'- aUGACCGaauuCGAGaugaauacCGACGacGCCGGCa -3'
miRNA:   3'- -ACUGGCauu-GCUC--------GCUGCguUGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 1739 0.66 0.759061
Target:  5'- gUGG-CGUAugGcccguuGCGGCGgGugCGGCa -3'
miRNA:   3'- -ACUgGCAUugCu-----CGCUGCgUugGCCG- -5'
27983 5' -54.4 NC_005886.2 + 5560 0.73 0.342044
Target:  5'- cGcCCGUAACGuuuucccggaacgcaAGCGACGCuacACCGGg -3'
miRNA:   3'- aCuGGCAUUGC---------------UCGCUGCGu--UGGCCg -5'
27983 5' -54.4 NC_005886.2 + 6655 0.66 0.748661
Target:  5'- aUGugCGUGgauuGCGucacgccuGCGAuaacCGCAuCCGGCa -3'
miRNA:   3'- -ACugGCAU----UGCu-------CGCU----GCGUuGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 7097 0.74 0.30693
Target:  5'- -cACCGUGGCGAuCGACGCAcguugcACgGGCu -3'
miRNA:   3'- acUGGCAUUGCUcGCUGCGU------UGgCCG- -5'
27983 5' -54.4 NC_005886.2 + 7231 0.66 0.759061
Target:  5'- uUGACUGUuuGCGAaauaucguGCGAaGUAcGCCGGCu -3'
miRNA:   3'- -ACUGGCAu-UGCU--------CGCUgCGU-UGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 7334 0.82 0.092747
Target:  5'- cGGCCGaUGACG-GUaGCGCAGCCGGCg -3'
miRNA:   3'- aCUGGC-AUUGCuCGcUGCGUUGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 8000 0.67 0.684153
Target:  5'- cGACCuGUAcguUGGGCGuguuaGCAGCgGGCu -3'
miRNA:   3'- aCUGG-CAUu--GCUCGCug---CGUUGgCCG- -5'
27983 5' -54.4 NC_005886.2 + 10694 0.67 0.695097
Target:  5'- uUGAgCGUgaAugGAGUGACuGC-GCCGGg -3'
miRNA:   3'- -ACUgGCA--UugCUCGCUG-CGuUGGCCg -5'
27983 5' -54.4 NC_005886.2 + 11762 0.67 0.673158
Target:  5'- -cGCCGacgauGCGAuCGACGUGGCCGGg -3'
miRNA:   3'- acUGGCau---UGCUcGCUGCGUUGGCCg -5'
27983 5' -54.4 NC_005886.2 + 11945 0.76 0.243853
Target:  5'- -aACCGgguCGGGCGugGCAaacgGCCGGUg -3'
miRNA:   3'- acUGGCauuGCUCGCugCGU----UGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 12385 0.71 0.44779
Target:  5'- cUGACCGggGAUGAuaccGCGugGCAAaaGGUg -3'
miRNA:   3'- -ACUGGCa-UUGCU----CGCugCGUUggCCG- -5'
27983 5' -54.4 NC_005886.2 + 12569 0.67 0.683055
Target:  5'- -aAUCGUAuGCGGGCGcgucguucaugucGCuGCAACUGGCa -3'
miRNA:   3'- acUGGCAU-UGCUCGC-------------UG-CGUUGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 12811 0.69 0.567127
Target:  5'- -aGCCGcAACGgacuucacacagcaaGGCGGCGCGACaGGCu -3'
miRNA:   3'- acUGGCaUUGC---------------UCGCUGCGUUGgCCG- -5'
27983 5' -54.4 NC_005886.2 + 13334 0.73 0.347051
Target:  5'- cGGauGUAGCGAGCGAacUGCAAaCGGCa -3'
miRNA:   3'- aCUggCAUUGCUCGCU--GCGUUgGCCG- -5'
27983 5' -54.4 NC_005886.2 + 14538 0.69 0.584668
Target:  5'- cGAUCGgAACcGGCGACGCGuACgaGGCg -3'
miRNA:   3'- aCUGGCaUUGcUCGCUGCGU-UGg-CCG- -5'
27983 5' -54.4 NC_005886.2 + 15390 0.66 0.759061
Target:  5'- -aGCCGUuuuuAAUcGGCGGCGCAAgCGuGCu -3'
miRNA:   3'- acUGGCA----UUGcUCGCUGCGUUgGC-CG- -5'
27983 5' -54.4 NC_005886.2 + 16224 0.66 0.738142
Target:  5'- cUGACgGUAgguugcgaACGGGCGcuucaacauCGCG-CCGGCc -3'
miRNA:   3'- -ACUGgCAU--------UGCUCGCu--------GCGUuGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.