miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27983 5' -54.4 NC_005886.2 + 1484 0.67 0.677561
Target:  5'- cGGCCc-GACGAGCGccaguggcaccuuaaGCGUcgauuuGCCGGCg -3'
miRNA:   3'- aCUGGcaUUGCUCGC---------------UGCGu-----UGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 36248 0.69 0.562761
Target:  5'- cGGCggCGgcACGGGCGGCGgCGG-CGGCa -3'
miRNA:   3'- aCUG--GCauUGCUCGCUGC-GUUgGCCG- -5'
27983 5' -54.4 NC_005886.2 + 36334 0.69 0.57369
Target:  5'- cGGgCGgcACGGGCGGUGguACgGGCg -3'
miRNA:   3'- aCUgGCauUGCUCGCUGCguUGgCCG- -5'
27983 5' -54.4 NC_005886.2 + 36218 0.69 0.57369
Target:  5'- cGGCggCGgcACGGGCGGCaCGGgCGGCa -3'
miRNA:   3'- aCUG--GCauUGCUCGCUGcGUUgGCCG- -5'
27983 5' -54.4 NC_005886.2 + 19507 0.69 0.584668
Target:  5'- cGGCCGgacguucAACGAGCGugGUuucaucuuGCgCGGUa -3'
miRNA:   3'- aCUGGCa------UUGCUCGCugCGu-------UG-GCCG- -5'
27983 5' -54.4 NC_005886.2 + 14538 0.69 0.584668
Target:  5'- cGAUCGgAACcGGCGACGCGuACgaGGCg -3'
miRNA:   3'- aCUGGCaUUGcUCGCUGCGU-UGg-CCG- -5'
27983 5' -54.4 NC_005886.2 + 24958 0.68 0.651061
Target:  5'- aUGGCaCGUggUGAuucGCGccGCGCAcucggguuaaACCGGCu -3'
miRNA:   3'- -ACUG-GCAuuGCU---CGC--UGCGU----------UGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 36277 0.67 0.661018
Target:  5'- cGGgCGgcACGGGCGGCaucggcgGCGGCauCGGCg -3'
miRNA:   3'- aCUgGCauUGCUCGCUG-------CGUUG--GCCG- -5'
27983 5' -54.4 NC_005886.2 + 11762 0.67 0.673158
Target:  5'- -cGCCGacgauGCGAuCGACGUGGCCGGg -3'
miRNA:   3'- acUGGCau---UGCUcGCUGCGUUGGCCg -5'
27983 5' -54.4 NC_005886.2 + 44605 0.69 0.551888
Target:  5'- -aGCCGUGGcCGAGCGAUGgcaAGCCGaGUu -3'
miRNA:   3'- acUGGCAUU-GCUCGCUGCg--UUGGC-CG- -5'
27983 5' -54.4 NC_005886.2 + 27772 0.69 0.551888
Target:  5'- -aACCGUAcCGGcGCGugGCAACauGCa -3'
miRNA:   3'- acUGGCAUuGCU-CGCugCGUUGgcCG- -5'
27983 5' -54.4 NC_005886.2 + 20875 0.69 0.54108
Target:  5'- cGAauaCGUuuGCGAa-GAUGCGACCGGCa -3'
miRNA:   3'- aCUg--GCAu-UGCUcgCUGCGUUGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 38505 0.76 0.237551
Target:  5'- cGGCCGcgcuugGAUcagcaaGuGCGGCGCGGCCGGCa -3'
miRNA:   3'- aCUGGCa-----UUG------CuCGCUGCGUUGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 7097 0.74 0.30693
Target:  5'- -cACCGUGGCGAuCGACGCAcguugcACgGGCu -3'
miRNA:   3'- acUGGCAUUGCUcGCUGCGU------UGgCCG- -5'
27983 5' -54.4 NC_005886.2 + 43754 0.73 0.330564
Target:  5'- cGGCCGUGACGc-UGGCGCAGCguugGGCg -3'
miRNA:   3'- aCUGGCAUUGCucGCUGCGUUGg---CCG- -5'
27983 5' -54.4 NC_005886.2 + 5560 0.73 0.342044
Target:  5'- cGcCCGUAACGuuuucccggaacgcaAGCGACGCuacACCGGg -3'
miRNA:   3'- aCuGGCAUUGC---------------UCGCUGCGu--UGGCCg -5'
27983 5' -54.4 NC_005886.2 + 16677 0.72 0.4187
Target:  5'- cGcACCGUucGGCacuGCGACGUAcGCCGGCa -3'
miRNA:   3'- aC-UGGCA--UUGcu-CGCUGCGU-UGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 26882 0.71 0.42827
Target:  5'- cUGACCGUGuGCGAucGCGugaaGCGuCAGCCGcGCa -3'
miRNA:   3'- -ACUGGCAU-UGCU--CGC----UGC-GUUGGC-CG- -5'
27983 5' -54.4 NC_005886.2 + 16843 0.7 0.513331
Target:  5'- cGGCuCGaacgcgcuucuuCGAGCGGCGCAacuugcaaACCGGCc -3'
miRNA:   3'- aCUG-GCauu---------GCUCGCUGCGU--------UGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 18529 0.7 0.534629
Target:  5'- aGACCG--GCGAGCaGCGUAGCgacacgcuucaccuuCGGCg -3'
miRNA:   3'- aCUGGCauUGCUCGcUGCGUUG---------------GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.