miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27992 5' -50.3 NC_005886.2 + 2103 0.66 0.929343
Target:  5'- uCUGACGUUaucGCCGgcACCU-CGCAACGc- -3'
miRNA:   3'- -GGCUGCAA---CGGU--UGGAcGUGUUGUuc -5'
27992 5' -50.3 NC_005886.2 + 19522 0.66 0.929343
Target:  5'- aUCG-CGUacugcuucucUGCCGACCUgaugGCACGugGGGc -3'
miRNA:   3'- -GGCuGCA----------ACGGUUGGA----CGUGUugUUC- -5'
27992 5' -50.3 NC_005886.2 + 5631 0.66 0.929343
Target:  5'- uCgGGCGUUGaCAugcCCUGCAauGCAAGg -3'
miRNA:   3'- -GgCUGCAACgGUu--GGACGUguUGUUC- -5'
27992 5' -50.3 NC_005886.2 + 4968 0.66 0.923346
Target:  5'- gCGugGUUGCCuuauuguCUUGCAaAGCAGu -3'
miRNA:   3'- gGCugCAACGGuu-----GGACGUgUUGUUc -5'
27992 5' -50.3 NC_005886.2 + 35887 0.66 0.923346
Target:  5'- uCCGACGUUGaugacagugaaCAGCCUGCGauuaugccCGAUGAa -3'
miRNA:   3'- -GGCUGCAACg----------GUUGGACGU--------GUUGUUc -5'
27992 5' -50.3 NC_005886.2 + 10325 0.66 0.917047
Target:  5'- aCGAUGUcuUCAACuUUGCGCAGCAAc -3'
miRNA:   3'- gGCUGCAacGGUUG-GACGUGUUGUUc -5'
27992 5' -50.3 NC_005886.2 + 19553 0.66 0.910449
Target:  5'- gCUGGCGUUGUguACgUcGCAgCGACGAGc -3'
miRNA:   3'- -GGCUGCAACGguUGgA-CGU-GUUGUUC- -5'
27992 5' -50.3 NC_005886.2 + 36974 0.66 0.910449
Target:  5'- gUCGACG--GCCAGCUUGaACAACGu- -3'
miRNA:   3'- -GGCUGCaaCGGUUGGACgUGUUGUuc -5'
27992 5' -50.3 NC_005886.2 + 38595 0.66 0.896364
Target:  5'- uUGGUGUUGCCGGCC-GCGCcGCAc- -3'
miRNA:   3'- gGCUGCAACGGUUGGaCGUGuUGUuc -5'
27992 5' -50.3 NC_005886.2 + 17964 0.67 0.881118
Target:  5'- cCCgGACGgcuuguccUUGCCGuCCUGCACaAGCAc- -3'
miRNA:   3'- -GG-CUGC--------AACGGUuGGACGUG-UUGUuc -5'
27992 5' -50.3 NC_005886.2 + 38275 0.67 0.881118
Target:  5'- gCCGACGUgcgaaCCGACgUGCGCGGg--- -3'
miRNA:   3'- -GGCUGCAac---GGUUGgACGUGUUguuc -5'
27992 5' -50.3 NC_005886.2 + 38931 0.67 0.873074
Target:  5'- aUCGGCGcUGCUgcGGgCUGCuCGACAGGg -3'
miRNA:   3'- -GGCUGCaACGG--UUgGACGuGUUGUUC- -5'
27992 5' -50.3 NC_005886.2 + 44814 0.67 0.870608
Target:  5'- gCGACGUauugugagaacgacUGUCAaggaacgaucgACCUGUACcGCAAGa -3'
miRNA:   3'- gGCUGCA--------------ACGGU-----------UGGACGUGuUGUUC- -5'
27992 5' -50.3 NC_005886.2 + 1374 0.67 0.863912
Target:  5'- aCGACGUauacuauUGCUGACgCUGCACGGgAu- -3'
miRNA:   3'- gGCUGCA-------ACGGUUG-GACGUGUUgUuc -5'
27992 5' -50.3 NC_005886.2 + 37047 0.67 0.856179
Target:  5'- aCGACGUUGuUCAAgCUGgCcgucgACAACAAGg -3'
miRNA:   3'- gGCUGCAAC-GGUUgGAC-G-----UGUUGUUC- -5'
27992 5' -50.3 NC_005886.2 + 13433 0.68 0.828946
Target:  5'- aCCGgcuucACGUUGCCAGCgUGCG-AACuGGa -3'
miRNA:   3'- -GGC-----UGCAACGGUUGgACGUgUUGuUC- -5'
27992 5' -50.3 NC_005886.2 + 36516 0.68 0.828946
Target:  5'- aCGACGUUGcCCAGuuUGCAgCAgaucgcggACAAGu -3'
miRNA:   3'- gGCUGCAAC-GGUUggACGU-GU--------UGUUC- -5'
27992 5' -50.3 NC_005886.2 + 33038 0.68 0.809647
Target:  5'- gCGACGUUcuCUGAUCUGUACGACGGu -3'
miRNA:   3'- gGCUGCAAc-GGUUGGACGUGUUGUUc -5'
27992 5' -50.3 NC_005886.2 + 34040 0.68 0.809647
Target:  5'- aCGACGgugaUGCCGACCUGauccCGACu-- -3'
miRNA:   3'- gGCUGCa---ACGGUUGGACgu--GUUGuuc -5'
27992 5' -50.3 NC_005886.2 + 37031 0.69 0.768712
Target:  5'- gCCGACGaguccUGCCGucacGCCUGCcgcuuCAGCGAu -3'
miRNA:   3'- -GGCUGCa----ACGGU----UGGACGu----GUUGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.