miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27996 3' -60.2 NC_005887.1 + 7382 0.66 0.400086
Target:  5'- aACGCCGCGUucAGcUCgCCGacgacgauCGCCACGgUCg -3'
miRNA:   3'- -UGCGGUGCG--UCaAG-GGC--------GCGGUGC-AG- -5'
27996 3' -60.2 NC_005887.1 + 25152 0.66 0.400086
Target:  5'- uGCGCgGCGCAacaUUgCCGCgugcgGCCGCGUUc -3'
miRNA:   3'- -UGCGgUGCGUc--AAgGGCG-----CGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 862 0.66 0.39918
Target:  5'- gUGCCcguggACGCGuggCCCGCGCCGCcggacgaGUCa -3'
miRNA:   3'- uGCGG-----UGCGUcaaGGGCGCGGUG-------CAG- -5'
27996 3' -60.2 NC_005887.1 + 40125 0.66 0.391083
Target:  5'- gACGCCuacagcgUGCGGUgcgcgCUgCGCGCCGCGcUCg -3'
miRNA:   3'- -UGCGGu------GCGUCAa----GG-GCGCGGUGC-AG- -5'
27996 3' -60.2 NC_005887.1 + 26425 0.66 0.391083
Target:  5'- -gGCCGCGCGGgaaCgCGCGCUGCa-- -3'
miRNA:   3'- ugCGGUGCGUCaa-GgGCGCGGUGcag -5'
27996 3' -60.2 NC_005887.1 + 392 0.66 0.391083
Target:  5'- cGCGCCGCGCAcGcaCCaCGCGagCACGcCg -3'
miRNA:   3'- -UGCGGUGCGU-CaaGG-GCGCg-GUGCaG- -5'
27996 3' -60.2 NC_005887.1 + 35138 0.66 0.382214
Target:  5'- gACGCCGa-CAGcgCCUGCGCaCGCGa- -3'
miRNA:   3'- -UGCGGUgcGUCaaGGGCGCG-GUGCag -5'
27996 3' -60.2 NC_005887.1 + 31195 0.66 0.382214
Target:  5'- cAUGCgCGCGUAGaUUUCgGgCGCCGCGUg -3'
miRNA:   3'- -UGCG-GUGCGUC-AAGGgC-GCGGUGCAg -5'
27996 3' -60.2 NC_005887.1 + 9624 0.66 0.373479
Target:  5'- aGCGCCGCGCuaccccgccgugGGUgaaCCGCGCgGCu-- -3'
miRNA:   3'- -UGCGGUGCG------------UCAag-GGCGCGgUGcag -5'
27996 3' -60.2 NC_005887.1 + 1479 0.66 0.373479
Target:  5'- gACGCCGacggcgUGCGGcgCUCGCGCgGCG-Cg -3'
miRNA:   3'- -UGCGGU------GCGUCaaGGGCGCGgUGCaG- -5'
27996 3' -60.2 NC_005887.1 + 6810 0.66 0.373479
Target:  5'- cACGCUGCGCGa--CUgGCGCUACGUg -3'
miRNA:   3'- -UGCGGUGCGUcaaGGgCGCGGUGCAg -5'
27996 3' -60.2 NC_005887.1 + 30548 0.66 0.370885
Target:  5'- gACGCCACGCAGcagcgUCuuGUacuucgacgagcugGUCAuCGUCg -3'
miRNA:   3'- -UGCGGUGCGUCa----AGggCG--------------CGGU-GCAG- -5'
27996 3' -60.2 NC_005887.1 + 24472 0.66 0.364881
Target:  5'- uCGUCGCgGCGGacaggUUCCGgGCCcACGUCg -3'
miRNA:   3'- uGCGGUG-CGUCa----AGGGCgCGG-UGCAG- -5'
27996 3' -60.2 NC_005887.1 + 9667 0.66 0.364881
Target:  5'- uGCGCUguACGCGGUUgCCgaaGCGCgCACG-Cg -3'
miRNA:   3'- -UGCGG--UGCGUCAAgGG---CGCG-GUGCaG- -5'
27996 3' -60.2 NC_005887.1 + 14647 0.66 0.364881
Target:  5'- -aGCCgGCGCGGUgcugCCCGuCGCCGguUCg -3'
miRNA:   3'- ugCGG-UGCGUCAa---GGGC-GCGGUgcAG- -5'
27996 3' -60.2 NC_005887.1 + 41984 0.66 0.364881
Target:  5'- uCGCCuaucaGCAGcacggCCUGCGgcCCACGUCg -3'
miRNA:   3'- uGCGGug---CGUCaa---GGGCGC--GGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 14225 0.66 0.364881
Target:  5'- gGCGCCGCGCuGUU-CgGCGCgGCaUCc -3'
miRNA:   3'- -UGCGGUGCGuCAAgGgCGCGgUGcAG- -5'
27996 3' -60.2 NC_005887.1 + 32549 0.66 0.364881
Target:  5'- gUGCCAgGCuuucaccgcGUUCUCGCGCCaguGCGUg -3'
miRNA:   3'- uGCGGUgCGu--------CAAGGGCGCGG---UGCAg -5'
27996 3' -60.2 NC_005887.1 + 27344 0.66 0.356421
Target:  5'- uGCGCCACGCGcagcggCGCGCagacgaGCGUCg -3'
miRNA:   3'- -UGCGGUGCGUcaagg-GCGCGg-----UGCAG- -5'
27996 3' -60.2 NC_005887.1 + 17590 0.66 0.356421
Target:  5'- cACGCC-CGUcaaUCCCGCGCuCGCG-Cg -3'
miRNA:   3'- -UGCGGuGCGucaAGGGCGCG-GUGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.