miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27996 3' -60.2 NC_005887.1 + 20952 0.68 0.278829
Target:  5'- uUGCCAuuugcuCGCuGUUCCCGCgcuggcgcuuggcGCCACGcUCg -3'
miRNA:   3'- uGCGGU------GCGuCAAGGGCG-------------CGGUGC-AG- -5'
27996 3' -60.2 NC_005887.1 + 26523 0.7 0.221564
Target:  5'- aGCGCC-UGCAGUUucaggucgugcacCUCGUGCCACGg- -3'
miRNA:   3'- -UGCGGuGCGUCAA-------------GGGCGCGGUGCag -5'
27996 3' -60.2 NC_005887.1 + 8095 0.7 0.221564
Target:  5'- aGCGCgCGCGCAGcUCgCCGCGCUcgccgagGCGcCg -3'
miRNA:   3'- -UGCG-GUGCGUCaAG-GGCGCGG-------UGCaG- -5'
27996 3' -60.2 NC_005887.1 + 36680 0.69 0.250752
Target:  5'- uUGCCAgaauuCGguGUcggcuuccaucugcUUCCGCGUCACGUCg -3'
miRNA:   3'- uGCGGU-----GCguCA--------------AGGGCGCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 418 0.68 0.265828
Target:  5'- cGCGCCGCGCcg--CCCGCuguuGCUGCGcUCg -3'
miRNA:   3'- -UGCGGUGCGucaaGGGCG----CGGUGC-AG- -5'
27996 3' -60.2 NC_005887.1 + 42087 0.68 0.265828
Target:  5'- cUGUCGCGUGGggCgCGaUGCCGCGUCg -3'
miRNA:   3'- uGCGGUGCGUCaaGgGC-GCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 10264 0.68 0.265828
Target:  5'- cCGCCGCcaggucaacggGCAGacCgUGCGCUACGUCg -3'
miRNA:   3'- uGCGGUG-----------CGUCaaGgGCGCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 29700 0.68 0.272608
Target:  5'- cUGCaCGCGCAGccaCUCGcCGUCGCGUCg -3'
miRNA:   3'- uGCG-GUGCGUCaa-GGGC-GCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 26080 0.68 0.272608
Target:  5'- cGCGUCA-GCGG--CCCGCGCgGCGUUu -3'
miRNA:   3'- -UGCGGUgCGUCaaGGGCGCGgUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 41191 0.7 0.220987
Target:  5'- cCGCCugGCugcauccgaCCCGCGCguCGUCg -3'
miRNA:   3'- uGCGGugCGucaa-----GGGCGCGguGCAG- -5'
27996 3' -60.2 NC_005887.1 + 36602 0.7 0.205367
Target:  5'- gACGCCGCGCaccuuuuguuucAGUgcaUCgCGCGCCuucuccugcGCGUCg -3'
miRNA:   3'- -UGCGGUGCG------------UCA---AGgGCGCGG---------UGCAG- -5'
27996 3' -60.2 NC_005887.1 + 34654 0.7 0.200025
Target:  5'- cGCGCCGgcuUGcCGGUUUCCGgaucCGCCACGUUg -3'
miRNA:   3'- -UGCGGU---GC-GUCAAGGGC----GCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 2763 0.73 0.12281
Target:  5'- uGCGCauaaACGCAcuaUCCUGCGCCACGcCa -3'
miRNA:   3'- -UGCGg---UGCGUca-AGGGCGCGGUGCaG- -5'
27996 3' -60.2 NC_005887.1 + 35810 0.72 0.152971
Target:  5'- uCGUagaaCGCGCuguGUUCCUcguGCGCCGCGUCg -3'
miRNA:   3'- uGCG----GUGCGu--CAAGGG---CGCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 10208 0.72 0.161063
Target:  5'- uGCGUCGCGUcGaugCCCGCGCCggacggcGCGUCu -3'
miRNA:   3'- -UGCGGUGCGuCaa-GGGCGCGG-------UGCAG- -5'
27996 3' -60.2 NC_005887.1 + 31258 0.71 0.184717
Target:  5'- cUGCCAC-CAGUaCUCGUcgGCCGCGUCg -3'
miRNA:   3'- uGCGGUGcGUCAaGGGCG--CGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 14980 0.71 0.189701
Target:  5'- uACGCCGCGCAGg--CCGCGCaggccgcagGCGUg -3'
miRNA:   3'- -UGCGGUGCGUCaagGGCGCGg--------UGCAg -5'
27996 3' -60.2 NC_005887.1 + 32949 0.71 0.189701
Target:  5'- aACGaCCGCGCGaauacGUUCUCGCGCgGCG-Cg -3'
miRNA:   3'- -UGC-GGUGCGU-----CAAGGGCGCGgUGCaG- -5'
27996 3' -60.2 NC_005887.1 + 10623 0.7 0.200025
Target:  5'- cACGCUucuCGCGGagCCUGgGCgGCGUCg -3'
miRNA:   3'- -UGCGGu--GCGUCaaGGGCgCGgUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 32714 0.7 0.200025
Target:  5'- -aGCCGCGCGGUUCaCCcacggcgggguaGCGCgGCGcUCg -3'
miRNA:   3'- ugCGGUGCGUCAAG-GG------------CGCGgUGC-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.