Results 1 - 20 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27996 | 3' | -60.2 | NC_005887.1 | + | 20952 | 0.68 | 0.278829 |
Target: 5'- uUGCCAuuugcuCGCuGUUCCCGCgcuggcgcuuggcGCCACGcUCg -3' miRNA: 3'- uGCGGU------GCGuCAAGGGCG-------------CGGUGC-AG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 26523 | 0.7 | 0.221564 |
Target: 5'- aGCGCC-UGCAGUUucaggucgugcacCUCGUGCCACGg- -3' miRNA: 3'- -UGCGGuGCGUCAA-------------GGGCGCGGUGCag -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 8095 | 0.7 | 0.221564 |
Target: 5'- aGCGCgCGCGCAGcUCgCCGCGCUcgccgagGCGcCg -3' miRNA: 3'- -UGCG-GUGCGUCaAG-GGCGCGG-------UGCaG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 36680 | 0.69 | 0.250752 |
Target: 5'- uUGCCAgaauuCGguGUcggcuuccaucugcUUCCGCGUCACGUCg -3' miRNA: 3'- uGCGGU-----GCguCA--------------AGGGCGCGGUGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 418 | 0.68 | 0.265828 |
Target: 5'- cGCGCCGCGCcg--CCCGCuguuGCUGCGcUCg -3' miRNA: 3'- -UGCGGUGCGucaaGGGCG----CGGUGC-AG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 42087 | 0.68 | 0.265828 |
Target: 5'- cUGUCGCGUGGggCgCGaUGCCGCGUCg -3' miRNA: 3'- uGCGGUGCGUCaaGgGC-GCGGUGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 10264 | 0.68 | 0.265828 |
Target: 5'- cCGCCGCcaggucaacggGCAGacCgUGCGCUACGUCg -3' miRNA: 3'- uGCGGUG-----------CGUCaaGgGCGCGGUGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 29700 | 0.68 | 0.272608 |
Target: 5'- cUGCaCGCGCAGccaCUCGcCGUCGCGUCg -3' miRNA: 3'- uGCG-GUGCGUCaa-GGGC-GCGGUGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 26080 | 0.68 | 0.272608 |
Target: 5'- cGCGUCA-GCGG--CCCGCGCgGCGUUu -3' miRNA: 3'- -UGCGGUgCGUCaaGGGCGCGgUGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 41191 | 0.7 | 0.220987 |
Target: 5'- cCGCCugGCugcauccgaCCCGCGCguCGUCg -3' miRNA: 3'- uGCGGugCGucaa-----GGGCGCGguGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 36602 | 0.7 | 0.205367 |
Target: 5'- gACGCCGCGCaccuuuuguuucAGUgcaUCgCGCGCCuucuccugcGCGUCg -3' miRNA: 3'- -UGCGGUGCG------------UCA---AGgGCGCGG---------UGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 34654 | 0.7 | 0.200025 |
Target: 5'- cGCGCCGgcuUGcCGGUUUCCGgaucCGCCACGUUg -3' miRNA: 3'- -UGCGGU---GC-GUCAAGGGC----GCGGUGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 2763 | 0.73 | 0.12281 |
Target: 5'- uGCGCauaaACGCAcuaUCCUGCGCCACGcCa -3' miRNA: 3'- -UGCGg---UGCGUca-AGGGCGCGGUGCaG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 35810 | 0.72 | 0.152971 |
Target: 5'- uCGUagaaCGCGCuguGUUCCUcguGCGCCGCGUCg -3' miRNA: 3'- uGCG----GUGCGu--CAAGGG---CGCGGUGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 10208 | 0.72 | 0.161063 |
Target: 5'- uGCGUCGCGUcGaugCCCGCGCCggacggcGCGUCu -3' miRNA: 3'- -UGCGGUGCGuCaa-GGGCGCGG-------UGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 31258 | 0.71 | 0.184717 |
Target: 5'- cUGCCAC-CAGUaCUCGUcgGCCGCGUCg -3' miRNA: 3'- uGCGGUGcGUCAaGGGCG--CGGUGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 14980 | 0.71 | 0.189701 |
Target: 5'- uACGCCGCGCAGg--CCGCGCaggccgcagGCGUg -3' miRNA: 3'- -UGCGGUGCGUCaagGGCGCGg--------UGCAg -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 32949 | 0.71 | 0.189701 |
Target: 5'- aACGaCCGCGCGaauacGUUCUCGCGCgGCG-Cg -3' miRNA: 3'- -UGC-GGUGCGU-----CAAGGGCGCGgUGCaG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 10623 | 0.7 | 0.200025 |
Target: 5'- cACGCUucuCGCGGagCCUGgGCgGCGUCg -3' miRNA: 3'- -UGCGGu--GCGUCaaGGGCgCGgUGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 32714 | 0.7 | 0.200025 |
Target: 5'- -aGCCGCGCGGUUCaCCcacggcgggguaGCGCgGCGcUCg -3' miRNA: 3'- ugCGGUGCGUCAAG-GG------------CGCGgUGC-AG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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