miRNA display CGI


Results 1 - 20 of 94 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27996 3' -60.2 NC_005887.1 + 25152 0.66 0.400086
Target:  5'- uGCGCgGCGCAacaUUgCCGCgugcgGCCGCGUUc -3'
miRNA:   3'- -UGCGgUGCGUc--AAgGGCG-----CGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 26745 0.67 0.308597
Target:  5'- cUGCUGCGCGacgCCCguGCGCUGCGUCu -3'
miRNA:   3'- uGCGGUGCGUcaaGGG--CGCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 29971 0.68 0.293781
Target:  5'- gACGUUguuuGCGCGGUgcugCUCGgccUGCCACGUCa -3'
miRNA:   3'- -UGCGG----UGCGUCAa---GGGC---GCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 42070 1.08 0.000263
Target:  5'- cACGCCACGCAGUUCCCGCGCCACGUCu -3'
miRNA:   3'- -UGCGGUGCGUCAAGGGCGCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 24472 0.66 0.364881
Target:  5'- uCGUCGCgGCGGacaggUUCCGgGCCcACGUCg -3'
miRNA:   3'- uGCGGUG-CGUCa----AGGGCgCGG-UGCAG- -5'
27996 3' -60.2 NC_005887.1 + 9667 0.66 0.364881
Target:  5'- uGCGCUguACGCGGUUgCCgaaGCGCgCACG-Cg -3'
miRNA:   3'- -UGCGG--UGCGUCAAgGG---CGCG-GUGCaG- -5'
27996 3' -60.2 NC_005887.1 + 22413 0.66 0.356421
Target:  5'- aGCGCCACGgAGgcugacaCCGgGCggcaGCGUCa -3'
miRNA:   3'- -UGCGGUGCgUCaag----GGCgCGg---UGCAG- -5'
27996 3' -60.2 NC_005887.1 + 21683 0.67 0.34481
Target:  5'- cCGUCGacaaagauauucgaUGCAGUgCCCGCaacagacaguccgGCCACGUCg -3'
miRNA:   3'- uGCGGU--------------GCGUCAaGGGCG-------------CGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 16237 0.67 0.339918
Target:  5'- cGCGCCGUGCAGgacaUCCUGCucgacGCCAUGa- -3'
miRNA:   3'- -UGCGGUGCGUCa---AGGGCG-----CGGUGCag -5'
27996 3' -60.2 NC_005887.1 + 12388 0.67 0.308597
Target:  5'- cGCGCgGCGguGUUCgCgGCGCUcgacacCGUCg -3'
miRNA:   3'- -UGCGgUGCguCAAG-GgCGCGGu-----GCAG- -5'
27996 3' -60.2 NC_005887.1 + 8631 0.67 0.323975
Target:  5'- uCGCCGCgaucgaGCAGaUCgaccgCCGCGCCACGa- -3'
miRNA:   3'- uGCGGUG------CGUCaAG-----GGCGCGGUGCag -5'
27996 3' -60.2 NC_005887.1 + 40654 0.67 0.339918
Target:  5'- cAUGCCGCGCAGcuugcgCUCGUGCUcgggGCGaUCg -3'
miRNA:   3'- -UGCGGUGCGUCaa----GGGCGCGG----UGC-AG- -5'
27996 3' -60.2 NC_005887.1 + 392 0.66 0.391083
Target:  5'- cGCGCCGCGCAcGcaCCaCGCGagCACGcCg -3'
miRNA:   3'- -UGCGGUGCGU-CaaGG-GCGCg-GUGCaG- -5'
27996 3' -60.2 NC_005887.1 + 1252 0.67 0.323975
Target:  5'- -gGCCGucUGCAGUUCCUcUGCCuCGUCc -3'
miRNA:   3'- ugCGGU--GCGUCAAGGGcGCGGuGCAG- -5'
27996 3' -60.2 NC_005887.1 + 35138 0.66 0.382214
Target:  5'- gACGCCGa-CAGcgCCUGCGCaCGCGa- -3'
miRNA:   3'- -UGCGGUgcGUCaaGGGCGCG-GUGCag -5'
27996 3' -60.2 NC_005887.1 + 322 0.67 0.339918
Target:  5'- cCGCCuuguACGCA--UCgCGCGCCGCGg- -3'
miRNA:   3'- uGCGG----UGCGUcaAGgGCGCGGUGCag -5'
27996 3' -60.2 NC_005887.1 + 15113 0.67 0.316216
Target:  5'- cGCGCgAUGCAGU---UGCGCCGCGa- -3'
miRNA:   3'- -UGCGgUGCGUCAaggGCGCGGUGCag -5'
27996 3' -60.2 NC_005887.1 + 41124 0.68 0.301119
Target:  5'- aGCGCCGCGCAGcgCCCGC-CagauaAgGUg -3'
miRNA:   3'- -UGCGGUGCGUCaaGGGCGcGg----UgCAg -5'
27996 3' -60.2 NC_005887.1 + 9624 0.66 0.373479
Target:  5'- aGCGCCGCGCuaccccgccgugGGUgaaCCGCGCgGCu-- -3'
miRNA:   3'- -UGCGGUGCG------------UCAag-GGCGCGgUGcag -5'
27996 3' -60.2 NC_005887.1 + 11561 0.66 0.356421
Target:  5'- cGCGCCauugaucgcGCGCAGaaggaacUCgCCGCGCgCACGgUCg -3'
miRNA:   3'- -UGCGG---------UGCGUCa------AG-GGCGCG-GUGC-AG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.