miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27996 3' -60.2 NC_005887.1 + 15919 0.68 0.286584
Target:  5'- cGCGCggcugcaGCGCGcGUUCCCGCGCgGCc-- -3'
miRNA:   3'- -UGCGg------UGCGU-CAAGGGCGCGgUGcag -5'
27996 3' -60.2 NC_005887.1 + 29971 0.68 0.293781
Target:  5'- gACGUUguuuGCGCGGUgcugCUCGgccUGCCACGUCa -3'
miRNA:   3'- -UGCGG----UGCGUCAa---GGGC---GCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 40654 0.67 0.339918
Target:  5'- cAUGCCGCGCAGcuugcgCUCGUGCUcgggGCGaUCg -3'
miRNA:   3'- -UGCGGUGCGUCaa----GGGCGCGG----UGC-AG- -5'
27996 3' -60.2 NC_005887.1 + 9624 0.66 0.373479
Target:  5'- aGCGCCGCGCuaccccgccgugGGUgaaCCGCGCgGCu-- -3'
miRNA:   3'- -UGCGGUGCG------------UCAag-GGCGCGgUGcag -5'
27996 3' -60.2 NC_005887.1 + 33849 0.7 0.222141
Target:  5'- aACGCCACGCcGUUacgcgaCUCGaGCCACGUg -3'
miRNA:   3'- -UGCGGUGCGuCAA------GGGCgCGGUGCAg -5'
27996 3' -60.2 NC_005887.1 + 12686 0.68 0.265828
Target:  5'- aGCGCCA-GCuGUgcuacCUCGCGCCGCG-Cg -3'
miRNA:   3'- -UGCGGUgCGuCAa----GGGCGCGGUGCaG- -5'
27996 3' -60.2 NC_005887.1 + 26745 0.67 0.308597
Target:  5'- cUGCUGCGCGacgCCCguGCGCUGCGUCu -3'
miRNA:   3'- uGCGGUGCGUcaaGGG--CGCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 35138 0.66 0.382214
Target:  5'- gACGCCGa-CAGcgCCUGCGCaCGCGa- -3'
miRNA:   3'- -UGCGGUgcGUCaaGGGCGCG-GUGCag -5'
27996 3' -60.2 NC_005887.1 + 29055 0.68 0.265828
Target:  5'- aACGCCugGCcgaucugguucAGcgCCUGCGCCuuugUGUCg -3'
miRNA:   3'- -UGCGGugCG-----------UCaaGGGCGCGGu---GCAG- -5'
27996 3' -60.2 NC_005887.1 + 392 0.66 0.391083
Target:  5'- cGCGCCGCGCAcGcaCCaCGCGagCACGcCg -3'
miRNA:   3'- -UGCGGUGCGU-CaaGG-GCGCg-GUGCaG- -5'
27996 3' -60.2 NC_005887.1 + 41124 0.68 0.301119
Target:  5'- aGCGCCGCGCAGcgCCCGC-CagauaAgGUg -3'
miRNA:   3'- -UGCGGUGCGUCaaGGGCGcGg----UgCAg -5'
27996 3' -60.2 NC_005887.1 + 8570 0.68 0.286584
Target:  5'- cGCGCUugGUGGaagCCCGgcaCGCCGCGcCa -3'
miRNA:   3'- -UGCGGugCGUCaa-GGGC---GCGGUGCaG- -5'
27996 3' -60.2 NC_005887.1 + 1252 0.67 0.323975
Target:  5'- -gGCCGucUGCAGUUCCUcUGCCuCGUCc -3'
miRNA:   3'- ugCGGU--GCGUCAAGGGcGCGGuGCAG- -5'
27996 3' -60.2 NC_005887.1 + 16237 0.67 0.339918
Target:  5'- cGCGCCGUGCAGgacaUCCUGCucgacGCCAUGa- -3'
miRNA:   3'- -UGCGGUGCGUCa---AGGGCG-----CGGUGCag -5'
27996 3' -60.2 NC_005887.1 + 22413 0.66 0.356421
Target:  5'- aGCGCCACGgAGgcugacaCCGgGCggcaGCGUCa -3'
miRNA:   3'- -UGCGGUGCgUCaag----GGCgCGg---UGCAG- -5'
27996 3' -60.2 NC_005887.1 + 24472 0.66 0.364881
Target:  5'- uCGUCGCgGCGGacaggUUCCGgGCCcACGUCg -3'
miRNA:   3'- uGCGGUG-CGUCa----AGGGCgCGG-UGCAG- -5'
27996 3' -60.2 NC_005887.1 + 26523 0.71 0.175096
Target:  5'- cGCGCCGCGCAagcgcugcaCCUGCGCCuCGUg -3'
miRNA:   3'- -UGCGGUGCGUcaa------GGGCGCGGuGCAg -5'
27996 3' -60.2 NC_005887.1 + 27646 0.7 0.205367
Target:  5'- uCGCCGCGCccggCCCGCccGCCGCGa- -3'
miRNA:   3'- uGCGGUGCGucaaGGGCG--CGGUGCag -5'
27996 3' -60.2 NC_005887.1 + 11325 0.69 0.240067
Target:  5'- -aGCCGCGgccugcgaaUAGUggCCUGCGCCGCGcCa -3'
miRNA:   3'- ugCGGUGC---------GUCAa-GGGCGCGGUGCaG- -5'
27996 3' -60.2 NC_005887.1 + 40864 0.69 0.246305
Target:  5'- cGCGCCGCGCgAGcgCCgCaCGCCgucgGCGUCg -3'
miRNA:   3'- -UGCGGUGCG-UCaaGG-GcGCGG----UGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.