miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27996 3' -60.2 NC_005887.1 + 9898 0.74 0.11748
Target:  5'- cACGCCGCGCAGUggcugcgcaaccugaUCgCCGCcgGCCACaUCg -3'
miRNA:   3'- -UGCGGUGCGUCA---------------AG-GGCG--CGGUGcAG- -5'
27996 3' -60.2 NC_005887.1 + 10208 0.72 0.161063
Target:  5'- uGCGUCGCGUcGaugCCCGCGCCggacggcGCGUCu -3'
miRNA:   3'- -UGCGGUGCGuCaa-GGGCGCGG-------UGCAG- -5'
27996 3' -60.2 NC_005887.1 + 10264 0.68 0.265828
Target:  5'- cCGCCGCcaggucaacggGCAGacCgUGCGCUACGUCg -3'
miRNA:   3'- uGCGGUG-----------CGUCaaGgGCGCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 10623 0.7 0.200025
Target:  5'- cACGCUucuCGCGGagCCUGgGCgGCGUCg -3'
miRNA:   3'- -UGCGGu--GCGUCaaGGGCgCGgUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 11325 0.69 0.240067
Target:  5'- -aGCCGCGgccugcgaaUAGUggCCUGCGCCGCGcCa -3'
miRNA:   3'- ugCGGUGC---------GUCAa-GGGCGCGGUGCaG- -5'
27996 3' -60.2 NC_005887.1 + 11561 0.66 0.356421
Target:  5'- cGCGCCauugaucgcGCGCAGaaggaacUCgCCGCGCgCACGgUCg -3'
miRNA:   3'- -UGCGG---------UGCGUCa------AG-GGCGCG-GUGC-AG- -5'
27996 3' -60.2 NC_005887.1 + 12388 0.67 0.308597
Target:  5'- cGCGCgGCGguGUUCgCgGCGCUcgacacCGUCg -3'
miRNA:   3'- -UGCGgUGCguCAAG-GgCGCGGu-----GCAG- -5'
27996 3' -60.2 NC_005887.1 + 12686 0.68 0.265828
Target:  5'- aGCGCCA-GCuGUgcuacCUCGCGCCGCG-Cg -3'
miRNA:   3'- -UGCGGUgCGuCAa----GGGCGCGGUGCaG- -5'
27996 3' -60.2 NC_005887.1 + 14006 0.68 0.301119
Target:  5'- uGCGCCGCGCGccUCCgcaaccgccggCGCGCCGCc-- -3'
miRNA:   3'- -UGCGGUGCGUcaAGG-----------GCGCGGUGcag -5'
27996 3' -60.2 NC_005887.1 + 14225 0.66 0.364881
Target:  5'- gGCGCCGCGCuGUU-CgGCGCgGCaUCc -3'
miRNA:   3'- -UGCGGUGCGuCAAgGgCGCGgUGcAG- -5'
27996 3' -60.2 NC_005887.1 + 14647 0.66 0.364881
Target:  5'- -aGCCgGCGCGGUgcugCCCGuCGCCGguUCg -3'
miRNA:   3'- ugCGG-UGCGUCAa---GGGC-GCGGUgcAG- -5'
27996 3' -60.2 NC_005887.1 + 14940 0.67 0.316216
Target:  5'- cACGCCGCGCGcugCCguacgaCGCGCCGCa-- -3'
miRNA:   3'- -UGCGGUGCGUcaaGG------GCGCGGUGcag -5'
27996 3' -60.2 NC_005887.1 + 14980 0.71 0.189701
Target:  5'- uACGCCGCGCAGg--CCGCGCaggccgcagGCGUg -3'
miRNA:   3'- -UGCGGUGCGUCaagGGCGCGg--------UGCAg -5'
27996 3' -60.2 NC_005887.1 + 15113 0.67 0.316216
Target:  5'- cGCGCgAUGCAGU---UGCGCCGCGa- -3'
miRNA:   3'- -UGCGgUGCGUCAaggGCGCGGUGCag -5'
27996 3' -60.2 NC_005887.1 + 15388 0.67 0.308597
Target:  5'- gACGCCGCGCuGaUCgCGCGCgGgcagcggauCGUCg -3'
miRNA:   3'- -UGCGGUGCGuCaAGgGCGCGgU---------GCAG- -5'
27996 3' -60.2 NC_005887.1 + 15692 0.68 0.301119
Target:  5'- cCGCCGCGCGGccggaugaUUCCGCcGCCgGCGUg -3'
miRNA:   3'- uGCGGUGCGUCa-------AGGGCG-CGG-UGCAg -5'
27996 3' -60.2 NC_005887.1 + 15919 0.68 0.286584
Target:  5'- cGCGCggcugcaGCGCGcGUUCCCGCGCgGCc-- -3'
miRNA:   3'- -UGCGg------UGCGU-CAAGGGCGCGgUGcag -5'
27996 3' -60.2 NC_005887.1 + 16237 0.67 0.339918
Target:  5'- cGCGCCGUGCAGgacaUCCUGCucgacGCCAUGa- -3'
miRNA:   3'- -UGCGGUGCGUCa---AGGGCG-----CGGUGCag -5'
27996 3' -60.2 NC_005887.1 + 17291 0.67 0.348099
Target:  5'- gGCGCCGCGCgcgcaaacgccGGUUCggCGCaCCGCGUg -3'
miRNA:   3'- -UGCGGUGCG-----------UCAAGg-GCGcGGUGCAg -5'
27996 3' -60.2 NC_005887.1 + 17396 0.72 0.144853
Target:  5'- -gGCCGCGCgcaAGgcggCCCGCGCgcacCGCGUCg -3'
miRNA:   3'- ugCGGUGCG---UCaa--GGGCGCG----GUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.