miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27996 3' -60.2 NC_005887.1 + 33849 0.7 0.222141
Target:  5'- aACGCCACGCcGUUacgcgaCUCGaGCCACGUg -3'
miRNA:   3'- -UGCGGUGCGuCAA------GGGCgCGGUGCAg -5'
27996 3' -60.2 NC_005887.1 + 32949 0.71 0.189701
Target:  5'- aACGaCCGCGCGaauacGUUCUCGCGCgGCG-Cg -3'
miRNA:   3'- -UGC-GGUGCGU-----CAAGGGCGCGgUGCaG- -5'
27996 3' -60.2 NC_005887.1 + 32768 0.68 0.279527
Target:  5'- cGCGCCAUGCAGccggCUCGUGCgCAgGaUCg -3'
miRNA:   3'- -UGCGGUGCGUCaa--GGGCGCG-GUgC-AG- -5'
27996 3' -60.2 NC_005887.1 + 32714 0.7 0.200025
Target:  5'- -aGCCGCGCGGUUCaCCcacggcgggguaGCGCgGCGcUCg -3'
miRNA:   3'- ugCGGUGCGUCAAG-GG------------CGCGgUGC-AG- -5'
27996 3' -60.2 NC_005887.1 + 32549 0.66 0.364881
Target:  5'- gUGCCAgGCuuucaccgcGUUCUCGCGCCaguGCGUg -3'
miRNA:   3'- uGCGGUgCGu--------CAAGGGCGCGG---UGCAg -5'
27996 3' -60.2 NC_005887.1 + 31258 0.71 0.184717
Target:  5'- cUGCCAC-CAGUaCUCGUcgGCCGCGUCg -3'
miRNA:   3'- uGCGGUGcGUCAaGGGCG--CGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 31195 0.66 0.382214
Target:  5'- cAUGCgCGCGUAGaUUUCgGgCGCCGCGUg -3'
miRNA:   3'- -UGCG-GUGCGUC-AAGGgC-GCGGUGCAg -5'
27996 3' -60.2 NC_005887.1 + 30548 0.66 0.370885
Target:  5'- gACGCCACGCAGcagcgUCuuGUacuucgacgagcugGUCAuCGUCg -3'
miRNA:   3'- -UGCGGUGCGUCa----AGggCG--------------CGGU-GCAG- -5'
27996 3' -60.2 NC_005887.1 + 30183 0.68 0.278829
Target:  5'- aACGCC-UGCAGcuuccacUUCUCGCcggccagccacGCCGCGUCg -3'
miRNA:   3'- -UGCGGuGCGUC-------AAGGGCG-----------CGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 30160 0.69 0.233358
Target:  5'- gGCGCUguccuuCGCGGUcugcaugUUCUGCaGCCACGUCa -3'
miRNA:   3'- -UGCGGu-----GCGUCA-------AGGGCG-CGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 29971 0.68 0.293781
Target:  5'- gACGUUguuuGCGCGGUgcugCUCGgccUGCCACGUCa -3'
miRNA:   3'- -UGCGG----UGCGUCAa---GGGC---GCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 29700 0.68 0.272608
Target:  5'- cUGCaCGCGCAGccaCUCGcCGUCGCGUCg -3'
miRNA:   3'- uGCG-GUGCGUCaa-GGGC-GCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 29255 0.68 0.286584
Target:  5'- cACGCCcUGCAGcacUCCgcgaucgaGCGCCGCGUUc -3'
miRNA:   3'- -UGCGGuGCGUCa--AGGg-------CGCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 29055 0.68 0.265828
Target:  5'- aACGCCugGCcgaucugguucAGcgCCUGCGCCuuugUGUCg -3'
miRNA:   3'- -UGCGGugCG-----------UCaaGGGCGCGGu---GCAG- -5'
27996 3' -60.2 NC_005887.1 + 27646 0.7 0.205367
Target:  5'- uCGCCGCGCccggCCCGCccGCCGCGa- -3'
miRNA:   3'- uGCGGUGCGucaaGGGCG--CGGUGCag -5'
27996 3' -60.2 NC_005887.1 + 27362 0.68 0.293781
Target:  5'- cACGCCugcggccuGCGCGG--CCUGCGCgGCGUa -3'
miRNA:   3'- -UGCGG--------UGCGUCaaGGGCGCGgUGCAg -5'
27996 3' -60.2 NC_005887.1 + 27344 0.66 0.356421
Target:  5'- uGCGCCACGCGcagcggCGCGCagacgaGCGUCg -3'
miRNA:   3'- -UGCGGUGCGUcaagg-GCGCGg-----UGCAG- -5'
27996 3' -60.2 NC_005887.1 + 26745 0.67 0.308597
Target:  5'- cUGCUGCGCGacgCCCguGCGCUGCGUCu -3'
miRNA:   3'- uGCGGUGCGUcaaGGG--CGCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 26523 0.7 0.221564
Target:  5'- aGCGCC-UGCAGUUucaggucgugcacCUCGUGCCACGg- -3'
miRNA:   3'- -UGCGGuGCGUCAA-------------GGGCGCGGUGCag -5'
27996 3' -60.2 NC_005887.1 + 26523 0.71 0.175096
Target:  5'- cGCGCCGCGCAagcgcugcaCCUGCGCCuCGUg -3'
miRNA:   3'- -UGCGGUGCGUcaa------GGGCGCGGuGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.