miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27996 3' -60.2 NC_005887.1 + 862 0.66 0.39918
Target:  5'- gUGCCcguggACGCGuggCCCGCGCCGCcggacgaGUCa -3'
miRNA:   3'- uGCGG-----UGCGUcaaGGGCGCGGUG-------CAG- -5'
27996 3' -60.2 NC_005887.1 + 7382 0.66 0.400086
Target:  5'- aACGCCGCGUucAGcUCgCCGacgacgauCGCCACGgUCg -3'
miRNA:   3'- -UGCGGUGCG--UCaAG-GGC--------GCGGUGC-AG- -5'
27996 3' -60.2 NC_005887.1 + 40125 0.66 0.391083
Target:  5'- gACGCCuacagcgUGCGGUgcgcgCUgCGCGCCGCGcUCg -3'
miRNA:   3'- -UGCGGu------GCGUCAa----GG-GCGCGGUGC-AG- -5'
27996 3' -60.2 NC_005887.1 + 12388 0.67 0.308597
Target:  5'- cGCGCgGCGguGUUCgCgGCGCUcgacacCGUCg -3'
miRNA:   3'- -UGCGgUGCguCAAG-GgCGCGGu-----GCAG- -5'
27996 3' -60.2 NC_005887.1 + 17291 0.67 0.348099
Target:  5'- gGCGCCGCGCgcgcaaacgccGGUUCggCGCaCCGCGUg -3'
miRNA:   3'- -UGCGGUGCG-----------UCAAGg-GCGcGGUGCAg -5'
27996 3' -60.2 NC_005887.1 + 14940 0.67 0.316216
Target:  5'- cACGCCGCGCGcugCCguacgaCGCGCCGCa-- -3'
miRNA:   3'- -UGCGGUGCGUcaaGG------GCGCGGUGcag -5'
27996 3' -60.2 NC_005887.1 + 15388 0.67 0.308597
Target:  5'- gACGCCGCGCuGaUCgCGCGCgGgcagcggauCGUCg -3'
miRNA:   3'- -UGCGGUGCGuCaAGgGCGCGgU---------GCAG- -5'
27996 3' -60.2 NC_005887.1 + 37401 0.67 0.308597
Target:  5'- gGCGCUGCGCGGUcgcgacugCCUGCacGCCAgGUg -3'
miRNA:   3'- -UGCGGUGCGUCAa-------GGGCG--CGGUgCAg -5'
27996 3' -60.2 NC_005887.1 + 322 0.67 0.339918
Target:  5'- cCGCCuuguACGCA--UCgCGCGCCGCGg- -3'
miRNA:   3'- uGCGG----UGCGUcaAGgGCGCGGUGCag -5'
27996 3' -60.2 NC_005887.1 + 40654 0.67 0.339918
Target:  5'- cAUGCCGCGCAGcuugcgCUCGUGCUcgggGCGaUCg -3'
miRNA:   3'- -UGCGGUGCGUCaa----GGGCGCGG----UGC-AG- -5'
27996 3' -60.2 NC_005887.1 + 16237 0.67 0.339918
Target:  5'- cGCGCCGUGCAGgacaUCCUGCucgacGCCAUGa- -3'
miRNA:   3'- -UGCGGUGCGUCa---AGGGCG-----CGGUGCag -5'
27996 3' -60.2 NC_005887.1 + 38421 0.67 0.331876
Target:  5'- cGCGCCGCGgAuGUUggUCUuCGCCAUGUCg -3'
miRNA:   3'- -UGCGGUGCgU-CAA--GGGcGCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 8631 0.67 0.323975
Target:  5'- uCGCCGCgaucgaGCAGaUCgaccgCCGCGCCACGa- -3'
miRNA:   3'- uGCGGUG------CGUCaAG-----GGCGCGGUGCag -5'
27996 3' -60.2 NC_005887.1 + 1252 0.67 0.323975
Target:  5'- -gGCCGucUGCAGUUCCUcUGCCuCGUCc -3'
miRNA:   3'- ugCGGU--GCGUCAAGGGcGCGGuGCAG- -5'
27996 3' -60.2 NC_005887.1 + 15113 0.67 0.316216
Target:  5'- cGCGCgAUGCAGU---UGCGCCGCGa- -3'
miRNA:   3'- -UGCGgUGCGUCAaggGCGCGGUGCag -5'
27996 3' -60.2 NC_005887.1 + 26745 0.67 0.308597
Target:  5'- cUGCUGCGCGacgCCCguGCGCUGCGUCu -3'
miRNA:   3'- uGCGGUGCGUcaaGGG--CGCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 21683 0.67 0.34481
Target:  5'- cCGUCGacaaagauauucgaUGCAGUgCCCGCaacagacaguccgGCCACGUCg -3'
miRNA:   3'- uGCGGU--------------GCGUCAaGGGCG-------------CGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 5574 0.68 0.286584
Target:  5'- uCGCCgACGCuga-CCUGCGCCAguuCGUCg -3'
miRNA:   3'- uGCGG-UGCGucaaGGGCGCGGU---GCAG- -5'
27996 3' -60.2 NC_005887.1 + 14006 0.68 0.301119
Target:  5'- uGCGCCGCGCGccUCCgcaaccgccggCGCGCCGCc-- -3'
miRNA:   3'- -UGCGGUGCGUcaAGG-----------GCGCGGUGcag -5'
27996 3' -60.2 NC_005887.1 + 15692 0.68 0.301119
Target:  5'- cCGCCGCGCGGccggaugaUUCCGCcGCCgGCGUg -3'
miRNA:   3'- uGCGGUGCGUCa-------AGGGCG-CGG-UGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.