miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27996 3' -60.2 NC_005887.1 + 36602 0.7 0.205367
Target:  5'- gACGCCGCGCaccuuuuguuucAGUgcaUCgCGCGCCuucuccugcGCGUCg -3'
miRNA:   3'- -UGCGGUGCG------------UCA---AGgGCGCGG---------UGCAG- -5'
27996 3' -60.2 NC_005887.1 + 27646 0.7 0.205367
Target:  5'- uCGCCGCGCccggCCCGCccGCCGCGa- -3'
miRNA:   3'- uGCGGUGCGucaaGGGCG--CGGUGCag -5'
27996 3' -60.2 NC_005887.1 + 33849 0.7 0.222141
Target:  5'- aACGCCACGCcGUUacgcgaCUCGaGCCACGUg -3'
miRNA:   3'- -UGCGGUGCGuCAA------GGGCgCGGUGCAg -5'
27996 3' -60.2 NC_005887.1 + 10623 0.7 0.200025
Target:  5'- cACGCUucuCGCGGagCCUGgGCgGCGUCg -3'
miRNA:   3'- -UGCGGu--GCGUCaaGGGCgCGgUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 34654 0.7 0.200025
Target:  5'- cGCGCCGgcuUGcCGGUUUCCGgaucCGCCACGUUg -3'
miRNA:   3'- -UGCGGU---GC-GUCAAGGGC----GCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 41191 0.7 0.220987
Target:  5'- cCGCCugGCugcauccgaCCCGCGCguCGUCg -3'
miRNA:   3'- uGCGGugCGucaa-----GGGCGCGguGCAG- -5'
27996 3' -60.2 NC_005887.1 + 26523 0.7 0.221564
Target:  5'- aGCGCC-UGCAGUUucaggucgugcacCUCGUGCCACGg- -3'
miRNA:   3'- -UGCGGuGCGUCAA-------------GGGCGCGGUGCag -5'
27996 3' -60.2 NC_005887.1 + 8095 0.7 0.221564
Target:  5'- aGCGCgCGCGCAGcUCgCCGCGCUcgccgagGCGcCg -3'
miRNA:   3'- -UGCG-GUGCGUCaAG-GGCGCGG-------UGCaG- -5'
27996 3' -60.2 NC_005887.1 + 32714 0.7 0.200025
Target:  5'- -aGCCGCGCGGUUCaCCcacggcgggguaGCGCgGCGcUCg -3'
miRNA:   3'- ugCGGUGCGUCAAG-GG------------CGCGgUGC-AG- -5'
27996 3' -60.2 NC_005887.1 + 716 0.69 0.246305
Target:  5'- uGCGCCGCGCAGacgcagcagaUCCucaCGgGCCGCGcCg -3'
miRNA:   3'- -UGCGGUGCGUCa---------AGG---GCgCGGUGCaG- -5'
27996 3' -60.2 NC_005887.1 + 30160 0.69 0.233358
Target:  5'- gGCGCUguccuuCGCGGUcugcaugUUCUGCaGCCACGUCa -3'
miRNA:   3'- -UGCGGu-----GCGUCA-------AGGGCG-CGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 40864 0.69 0.246305
Target:  5'- cGCGCCGCGCgAGcgCCgCaCGCCgucgGCGUCg -3'
miRNA:   3'- -UGCGGUGCG-UCaaGG-GcGCGG----UGCAG- -5'
27996 3' -60.2 NC_005887.1 + 23159 0.69 0.240067
Target:  5'- cGCGCCGC-CuGUcuccacgCCCGCGCCGC-UCa -3'
miRNA:   3'- -UGCGGUGcGuCAa------GGGCGCGGUGcAG- -5'
27996 3' -60.2 NC_005887.1 + 36680 0.69 0.250752
Target:  5'- uUGCCAgaauuCGguGUcggcuuccaucugcUUCCGCGUCACGUCg -3'
miRNA:   3'- uGCGGU-----GCguCA--------------AGGGCGCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 11325 0.69 0.240067
Target:  5'- -aGCCGCGgccugcgaaUAGUggCCUGCGCCGCGcCa -3'
miRNA:   3'- ugCGGUGC---------GUCAa-GGGCGCGGUGCaG- -5'
27996 3' -60.2 NC_005887.1 + 37726 0.69 0.233961
Target:  5'- cGCGCCG-GCGGccaCCgGCGCCGCGg- -3'
miRNA:   3'- -UGCGGUgCGUCaa-GGgCGCGGUGCag -5'
27996 3' -60.2 NC_005887.1 + 32768 0.68 0.279527
Target:  5'- cGCGCCAUGCAGccggCUCGUGCgCAgGaUCg -3'
miRNA:   3'- -UGCGGUGCGUCaa--GGGCGCG-GUgC-AG- -5'
27996 3' -60.2 NC_005887.1 + 29700 0.68 0.272608
Target:  5'- cUGCaCGCGCAGccaCUCGcCGUCGCGUCg -3'
miRNA:   3'- uGCG-GUGCGUCaa-GGGC-GCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 5574 0.68 0.286584
Target:  5'- uCGCCgACGCuga-CCUGCGCCAguuCGUCg -3'
miRNA:   3'- uGCGG-UGCGucaaGGGCGCGGU---GCAG- -5'
27996 3' -60.2 NC_005887.1 + 15692 0.68 0.301119
Target:  5'- cCGCCGCGCGGccggaugaUUCCGCcGCCgGCGUg -3'
miRNA:   3'- uGCGGUGCGUCa-------AGGGCG-CGG-UGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.