miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27996 3' -60.2 NC_005887.1 + 42070 1.08 0.000263
Target:  5'- cACGCCACGCAGUUCCCGCGCCACGUCu -3'
miRNA:   3'- -UGCGGUGCGUCAAGGGCGCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 19546 0.77 0.063652
Target:  5'- uGCGCCGCGUAGcUCgugaacaacagcggCCGCGCCgGCGUCg -3'
miRNA:   3'- -UGCGGUGCGUCaAG--------------GGCGCGG-UGCAG- -5'
27996 3' -60.2 NC_005887.1 + 24791 0.75 0.090294
Target:  5'- cGCGCCggucACGUAGUUCCaguaCGCGCCgaccgACGUCa -3'
miRNA:   3'- -UGCGG----UGCGUCAAGG----GCGCGG-----UGCAG- -5'
27996 3' -60.2 NC_005887.1 + 36029 0.75 0.087781
Target:  5'- aACGCCGcCGUAcagCuuGCGCCACGUCg -3'
miRNA:   3'- -UGCGGU-GCGUcaaGggCGCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 25888 0.74 0.103915
Target:  5'- cUGCCGCGCGGUcgagcgcaugCCCGCGCgCACG-Cg -3'
miRNA:   3'- uGCGGUGCGUCAa---------GGGCGCG-GUGCaG- -5'
27996 3' -60.2 NC_005887.1 + 4810 0.74 0.101045
Target:  5'- cGCGgaucUCGCGCAGUUCugCCGCGCCAaccaGUCg -3'
miRNA:   3'- -UGC----GGUGCGUCAAG--GGCGCGGUg---CAG- -5'
27996 3' -60.2 NC_005887.1 + 38010 0.74 0.101045
Target:  5'- cGCGCCgGCGUcgaucAGUUCCUGCGgCAUGUCc -3'
miRNA:   3'- -UGCGG-UGCG-----UCAAGGGCGCgGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 9898 0.74 0.11748
Target:  5'- cACGCCGCGCAGUggcugcgcaaccugaUCgCCGCcgGCCACaUCg -3'
miRNA:   3'- -UGCGGUGCGUCA---------------AG-GGCG--CGGUGcAG- -5'
27996 3' -60.2 NC_005887.1 + 35517 0.74 0.112994
Target:  5'- cACGUCGauguUGCAGa-CCCGCGCCACGUa -3'
miRNA:   3'- -UGCGGU----GCGUCaaGGGCGCGGUGCAg -5'
27996 3' -60.2 NC_005887.1 + 1838 0.73 0.119453
Target:  5'- cGCGCCGCGUGGUggaugCCgaacacgacguCGCGCCACGcCu -3'
miRNA:   3'- -UGCGGUGCGUCAa----GG-----------GCGCGGUGCaG- -5'
27996 3' -60.2 NC_005887.1 + 2763 0.73 0.12281
Target:  5'- uGCGCauaaACGCAcuaUCCUGCGCCACGcCa -3'
miRNA:   3'- -UGCGg---UGCGUca-AGGGCGCGGUGCaG- -5'
27996 3' -60.2 NC_005887.1 + 10208 0.72 0.161063
Target:  5'- uGCGUCGCGUcGaugCCCGCGCCggacggcGCGUCu -3'
miRNA:   3'- -UGCGGUGCGuCaa-GGGCGCGG-------UGCAG- -5'
27996 3' -60.2 NC_005887.1 + 35810 0.72 0.152971
Target:  5'- uCGUagaaCGCGCuguGUUCCUcguGCGCCGCGUCg -3'
miRNA:   3'- uGCG----GUGCGu--CAAGGG---CGCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 17396 0.72 0.144853
Target:  5'- -gGCCGCGCgcaAGgcggCCCGCGCgcacCGCGUCg -3'
miRNA:   3'- ugCGGUGCG---UCaa--GGGCGCG----GUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 26523 0.71 0.175096
Target:  5'- cGCGCCGCGCAagcgcugcaCCUGCGCCuCGUg -3'
miRNA:   3'- -UGCGGUGCGUcaa------GGGCGCGGuGCAg -5'
27996 3' -60.2 NC_005887.1 + 14980 0.71 0.189701
Target:  5'- uACGCCGCGCAGg--CCGCGCaggccgcagGCGUg -3'
miRNA:   3'- -UGCGGUGCGUCaagGGCGCGg--------UGCAg -5'
27996 3' -60.2 NC_005887.1 + 37575 0.71 0.184717
Target:  5'- uCGCCggcugGCGuCAGcUUCCCGCGCU-CGUCg -3'
miRNA:   3'- uGCGG-----UGC-GUC-AAGGGCGCGGuGCAG- -5'
27996 3' -60.2 NC_005887.1 + 24612 0.71 0.189701
Target:  5'- -aGCCGCGCGG---CCGUGCCgaGCGUCu -3'
miRNA:   3'- ugCGGUGCGUCaagGGCGCGG--UGCAG- -5'
27996 3' -60.2 NC_005887.1 + 31258 0.71 0.184717
Target:  5'- cUGCCAC-CAGUaCUCGUcgGCCGCGUCg -3'
miRNA:   3'- uGCGGUGcGUCAaGGGCG--CGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 32949 0.71 0.189701
Target:  5'- aACGaCCGCGCGaauacGUUCUCGCGCgGCG-Cg -3'
miRNA:   3'- -UGC-GGUGCGU-----CAAGGGCGCGgUGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.