miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27996 3' -60.2 NC_005887.1 + 278 0.66 0.356421
Target:  5'- gACGUgGCGCGGgaaCUGCGUgGCGUg -3'
miRNA:   3'- -UGCGgUGCGUCaagGGCGCGgUGCAg -5'
27996 3' -60.2 NC_005887.1 + 322 0.67 0.339918
Target:  5'- cCGCCuuguACGCA--UCgCGCGCCGCGg- -3'
miRNA:   3'- uGCGG----UGCGUcaAGgGCGCGGUGCag -5'
27996 3' -60.2 NC_005887.1 + 392 0.66 0.391083
Target:  5'- cGCGCCGCGCAcGcaCCaCGCGagCACGcCg -3'
miRNA:   3'- -UGCGGUGCGU-CaaGG-GCGCg-GUGCaG- -5'
27996 3' -60.2 NC_005887.1 + 418 0.68 0.265828
Target:  5'- cGCGCCGCGCcg--CCCGCuguuGCUGCGcUCg -3'
miRNA:   3'- -UGCGGUGCGucaaGGGCG----CGGUGC-AG- -5'
27996 3' -60.2 NC_005887.1 + 716 0.69 0.246305
Target:  5'- uGCGCCGCGCAGacgcagcagaUCCucaCGgGCCGCGcCg -3'
miRNA:   3'- -UGCGGUGCGUCa---------AGG---GCgCGGUGCaG- -5'
27996 3' -60.2 NC_005887.1 + 862 0.66 0.39918
Target:  5'- gUGCCcguggACGCGuggCCCGCGCCGCcggacgaGUCa -3'
miRNA:   3'- uGCGG-----UGCGUcaaGGGCGCGGUG-------CAG- -5'
27996 3' -60.2 NC_005887.1 + 873 0.68 0.283745
Target:  5'- gUGCCAUGCGGgaugaugagcagaUCCuCGCGCgGCGUg -3'
miRNA:   3'- uGCGGUGCGUCa------------AGG-GCGCGgUGCAg -5'
27996 3' -60.2 NC_005887.1 + 1252 0.67 0.323975
Target:  5'- -gGCCGucUGCAGUUCCUcUGCCuCGUCc -3'
miRNA:   3'- ugCGGU--GCGUCAAGGGcGCGGuGCAG- -5'
27996 3' -60.2 NC_005887.1 + 1479 0.66 0.373479
Target:  5'- gACGCCGacggcgUGCGGcgCUCGCGCgGCG-Cg -3'
miRNA:   3'- -UGCGGU------GCGUCaaGGGCGCGgUGCaG- -5'
27996 3' -60.2 NC_005887.1 + 1838 0.73 0.119453
Target:  5'- cGCGCCGCGUGGUggaugCCgaacacgacguCGCGCCACGcCu -3'
miRNA:   3'- -UGCGGUGCGUCAa----GG-----------GCGCGGUGCaG- -5'
27996 3' -60.2 NC_005887.1 + 2763 0.73 0.12281
Target:  5'- uGCGCauaaACGCAcuaUCCUGCGCCACGcCa -3'
miRNA:   3'- -UGCGg---UGCGUca-AGGGCGCGGUGCaG- -5'
27996 3' -60.2 NC_005887.1 + 4810 0.74 0.101045
Target:  5'- cGCGgaucUCGCGCAGUUCugCCGCGCCAaccaGUCg -3'
miRNA:   3'- -UGC----GGUGCGUCAAG--GGCGCGGUg---CAG- -5'
27996 3' -60.2 NC_005887.1 + 5574 0.68 0.286584
Target:  5'- uCGCCgACGCuga-CCUGCGCCAguuCGUCg -3'
miRNA:   3'- uGCGG-UGCGucaaGGGCGCGGU---GCAG- -5'
27996 3' -60.2 NC_005887.1 + 6810 0.66 0.373479
Target:  5'- cACGCUGCGCGa--CUgGCGCUACGUg -3'
miRNA:   3'- -UGCGGUGCGUcaaGGgCGCGGUGCAg -5'
27996 3' -60.2 NC_005887.1 + 7382 0.66 0.400086
Target:  5'- aACGCCGCGUucAGcUCgCCGacgacgauCGCCACGgUCg -3'
miRNA:   3'- -UGCGGUGCG--UCaAG-GGC--------GCGGUGC-AG- -5'
27996 3' -60.2 NC_005887.1 + 8095 0.7 0.221564
Target:  5'- aGCGCgCGCGCAGcUCgCCGCGCUcgccgagGCGcCg -3'
miRNA:   3'- -UGCG-GUGCGUCaAG-GGCGCGG-------UGCaG- -5'
27996 3' -60.2 NC_005887.1 + 8570 0.68 0.286584
Target:  5'- cGCGCUugGUGGaagCCCGgcaCGCCGCGcCa -3'
miRNA:   3'- -UGCGGugCGUCaa-GGGC---GCGGUGCaG- -5'
27996 3' -60.2 NC_005887.1 + 8631 0.67 0.323975
Target:  5'- uCGCCGCgaucgaGCAGaUCgaccgCCGCGCCACGa- -3'
miRNA:   3'- uGCGGUG------CGUCaAG-----GGCGCGGUGCag -5'
27996 3' -60.2 NC_005887.1 + 9624 0.66 0.373479
Target:  5'- aGCGCCGCGCuaccccgccgugGGUgaaCCGCGCgGCu-- -3'
miRNA:   3'- -UGCGGUGCG------------UCAag-GGCGCGgUGcag -5'
27996 3' -60.2 NC_005887.1 + 9667 0.66 0.364881
Target:  5'- uGCGCUguACGCGGUUgCCgaaGCGCgCACG-Cg -3'
miRNA:   3'- -UGCGG--UGCGUCAAgGG---CGCG-GUGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.