miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27996 3' -60.2 NC_005887.1 + 42087 0.68 0.265828
Target:  5'- cUGUCGCGUGGggCgCGaUGCCGCGUCg -3'
miRNA:   3'- uGCGGUGCGUCaaGgGC-GCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 42070 1.08 0.000263
Target:  5'- cACGCCACGCAGUUCCCGCGCCACGUCu -3'
miRNA:   3'- -UGCGGUGCGUCAAGGGCGCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 41984 0.66 0.364881
Target:  5'- uCGCCuaucaGCAGcacggCCUGCGgcCCACGUCg -3'
miRNA:   3'- uGCGGug---CGUCaa---GGGCGC--GGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 41191 0.7 0.220987
Target:  5'- cCGCCugGCugcauccgaCCCGCGCguCGUCg -3'
miRNA:   3'- uGCGGugCGucaa-----GGGCGCGguGCAG- -5'
27996 3' -60.2 NC_005887.1 + 41124 0.68 0.301119
Target:  5'- aGCGCCGCGCAGcgCCCGC-CagauaAgGUg -3'
miRNA:   3'- -UGCGGUGCGUCaaGGGCGcGg----UgCAg -5'
27996 3' -60.2 NC_005887.1 + 40864 0.69 0.246305
Target:  5'- cGCGCCGCGCgAGcgCCgCaCGCCgucgGCGUCg -3'
miRNA:   3'- -UGCGGUGCG-UCaaGG-GcGCGG----UGCAG- -5'
27996 3' -60.2 NC_005887.1 + 40654 0.67 0.339918
Target:  5'- cAUGCCGCGCAGcuugcgCUCGUGCUcgggGCGaUCg -3'
miRNA:   3'- -UGCGGUGCGUCaa----GGGCGCGG----UGC-AG- -5'
27996 3' -60.2 NC_005887.1 + 40125 0.66 0.391083
Target:  5'- gACGCCuacagcgUGCGGUgcgcgCUgCGCGCCGCGcUCg -3'
miRNA:   3'- -UGCGGu------GCGUCAa----GG-GCGCGGUGC-AG- -5'
27996 3' -60.2 NC_005887.1 + 38421 0.67 0.331876
Target:  5'- cGCGCCGCGgAuGUUggUCUuCGCCAUGUCg -3'
miRNA:   3'- -UGCGGUGCgU-CAA--GGGcGCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 38010 0.74 0.101045
Target:  5'- cGCGCCgGCGUcgaucAGUUCCUGCGgCAUGUCc -3'
miRNA:   3'- -UGCGG-UGCG-----UCAAGGGCGCgGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 37726 0.69 0.233961
Target:  5'- cGCGCCG-GCGGccaCCgGCGCCGCGg- -3'
miRNA:   3'- -UGCGGUgCGUCaa-GGgCGCGGUGCag -5'
27996 3' -60.2 NC_005887.1 + 37575 0.71 0.184717
Target:  5'- uCGCCggcugGCGuCAGcUUCCCGCGCU-CGUCg -3'
miRNA:   3'- uGCGG-----UGC-GUC-AAGGGCGCGGuGCAG- -5'
27996 3' -60.2 NC_005887.1 + 37401 0.67 0.308597
Target:  5'- gGCGCUGCGCGGUcgcgacugCCUGCacGCCAgGUg -3'
miRNA:   3'- -UGCGGUGCGUCAa-------GGGCG--CGGUgCAg -5'
27996 3' -60.2 NC_005887.1 + 36680 0.69 0.250752
Target:  5'- uUGCCAgaauuCGguGUcggcuuccaucugcUUCCGCGUCACGUCg -3'
miRNA:   3'- uGCGGU-----GCguCA--------------AGGGCGCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 36602 0.7 0.205367
Target:  5'- gACGCCGCGCaccuuuuguuucAGUgcaUCgCGCGCCuucuccugcGCGUCg -3'
miRNA:   3'- -UGCGGUGCG------------UCA---AGgGCGCGG---------UGCAG- -5'
27996 3' -60.2 NC_005887.1 + 36029 0.75 0.087781
Target:  5'- aACGCCGcCGUAcagCuuGCGCCACGUCg -3'
miRNA:   3'- -UGCGGU-GCGUcaaGggCGCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 35810 0.72 0.152971
Target:  5'- uCGUagaaCGCGCuguGUUCCUcguGCGCCGCGUCg -3'
miRNA:   3'- uGCG----GUGCGu--CAAGGG---CGCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 35517 0.74 0.112994
Target:  5'- cACGUCGauguUGCAGa-CCCGCGCCACGUa -3'
miRNA:   3'- -UGCGGU----GCGUCaaGGGCGCGGUGCAg -5'
27996 3' -60.2 NC_005887.1 + 35138 0.66 0.382214
Target:  5'- gACGCCGa-CAGcgCCUGCGCaCGCGa- -3'
miRNA:   3'- -UGCGGUgcGUCaaGGGCGCG-GUGCag -5'
27996 3' -60.2 NC_005887.1 + 34654 0.7 0.200025
Target:  5'- cGCGCCGgcuUGcCGGUUUCCGgaucCGCCACGUUg -3'
miRNA:   3'- -UGCGGU---GC-GUCAAGGGC----GCGGUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.