miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27996 3' -60.2 NC_005887.1 + 26425 0.66 0.391083
Target:  5'- -gGCCGCGCGGgaaCgCGCGCUGCa-- -3'
miRNA:   3'- ugCGGUGCGUCaa-GgGCGCGGUGcag -5'
27996 3' -60.2 NC_005887.1 + 26080 0.68 0.272608
Target:  5'- cGCGUCA-GCGG--CCCGCGCgGCGUUu -3'
miRNA:   3'- -UGCGGUgCGUCaaGGGCGCGgUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 25888 0.74 0.103915
Target:  5'- cUGCCGCGCGGUcgagcgcaugCCCGCGCgCACG-Cg -3'
miRNA:   3'- uGCGGUGCGUCAa---------GGGCGCG-GUGCaG- -5'
27996 3' -60.2 NC_005887.1 + 25419 0.68 0.279527
Target:  5'- aGCGCuCACGCA----UCGCGCC-CGUCg -3'
miRNA:   3'- -UGCG-GUGCGUcaagGGCGCGGuGCAG- -5'
27996 3' -60.2 NC_005887.1 + 25152 0.66 0.400086
Target:  5'- uGCGCgGCGCAacaUUgCCGCgugcgGCCGCGUUc -3'
miRNA:   3'- -UGCGgUGCGUc--AAgGGCG-----CGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 24791 0.75 0.090294
Target:  5'- cGCGCCggucACGUAGUUCCaguaCGCGCCgaccgACGUCa -3'
miRNA:   3'- -UGCGG----UGCGUCAAGG----GCGCGG-----UGCAG- -5'
27996 3' -60.2 NC_005887.1 + 24612 0.71 0.189701
Target:  5'- -aGCCGCGCGG---CCGUGCCgaGCGUCu -3'
miRNA:   3'- ugCGGUGCGUCaagGGCGCGG--UGCAG- -5'
27996 3' -60.2 NC_005887.1 + 24472 0.66 0.364881
Target:  5'- uCGUCGCgGCGGacaggUUCCGgGCCcACGUCg -3'
miRNA:   3'- uGCGGUG-CGUCa----AGGGCgCGG-UGCAG- -5'
27996 3' -60.2 NC_005887.1 + 23159 0.69 0.240067
Target:  5'- cGCGCCGC-CuGUcuccacgCCCGCGCCGC-UCa -3'
miRNA:   3'- -UGCGGUGcGuCAa------GGGCGCGGUGcAG- -5'
27996 3' -60.2 NC_005887.1 + 22413 0.66 0.356421
Target:  5'- aGCGCCACGgAGgcugacaCCGgGCggcaGCGUCa -3'
miRNA:   3'- -UGCGGUGCgUCaag----GGCgCGg---UGCAG- -5'
27996 3' -60.2 NC_005887.1 + 21683 0.67 0.34481
Target:  5'- cCGUCGacaaagauauucgaUGCAGUgCCCGCaacagacaguccgGCCACGUCg -3'
miRNA:   3'- uGCGGU--------------GCGUCAaGGGCG-------------CGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 20952 0.68 0.278829
Target:  5'- uUGCCAuuugcuCGCuGUUCCCGCgcuggcgcuuggcGCCACGcUCg -3'
miRNA:   3'- uGCGGU------GCGuCAAGGGCG-------------CGGUGC-AG- -5'
27996 3' -60.2 NC_005887.1 + 19546 0.77 0.063652
Target:  5'- uGCGCCGCGUAGcUCgugaacaacagcggCCGCGCCgGCGUCg -3'
miRNA:   3'- -UGCGGUGCGUCaAG--------------GGCGCGG-UGCAG- -5'
27996 3' -60.2 NC_005887.1 + 17590 0.66 0.356421
Target:  5'- cACGCC-CGUcaaUCCCGCGCuCGCG-Cg -3'
miRNA:   3'- -UGCGGuGCGucaAGGGCGCG-GUGCaG- -5'
27996 3' -60.2 NC_005887.1 + 17396 0.72 0.144853
Target:  5'- -gGCCGCGCgcaAGgcggCCCGCGCgcacCGCGUCg -3'
miRNA:   3'- ugCGGUGCG---UCaa--GGGCGCG----GUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 17291 0.67 0.348099
Target:  5'- gGCGCCGCGCgcgcaaacgccGGUUCggCGCaCCGCGUg -3'
miRNA:   3'- -UGCGGUGCG-----------UCAAGg-GCGcGGUGCAg -5'
27996 3' -60.2 NC_005887.1 + 16237 0.67 0.339918
Target:  5'- cGCGCCGUGCAGgacaUCCUGCucgacGCCAUGa- -3'
miRNA:   3'- -UGCGGUGCGUCa---AGGGCG-----CGGUGCag -5'
27996 3' -60.2 NC_005887.1 + 15919 0.68 0.286584
Target:  5'- cGCGCggcugcaGCGCGcGUUCCCGCGCgGCc-- -3'
miRNA:   3'- -UGCGg------UGCGU-CAAGGGCGCGgUGcag -5'
27996 3' -60.2 NC_005887.1 + 15692 0.68 0.301119
Target:  5'- cCGCCGCGCGGccggaugaUUCCGCcGCCgGCGUg -3'
miRNA:   3'- uGCGGUGCGUCa-------AGGGCG-CGG-UGCAg -5'
27996 3' -60.2 NC_005887.1 + 15388 0.67 0.308597
Target:  5'- gACGCCGCGCuGaUCgCGCGCgGgcagcggauCGUCg -3'
miRNA:   3'- -UGCGGUGCGuCaAGgGCGCGgU---------GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.