Results 41 - 60 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27996 | 3' | -60.2 | NC_005887.1 | + | 42087 | 0.68 | 0.265828 |
Target: 5'- cUGUCGCGUGGggCgCGaUGCCGCGUCg -3' miRNA: 3'- uGCGGUGCGUCaaGgGC-GCGGUGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 418 | 0.68 | 0.265828 |
Target: 5'- cGCGCCGCGCcg--CCCGCuguuGCUGCGcUCg -3' miRNA: 3'- -UGCGGUGCGucaaGGGCG----CGGUGC-AG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 36680 | 0.69 | 0.250752 |
Target: 5'- uUGCCAgaauuCGguGUcggcuuccaucugcUUCCGCGUCACGUCg -3' miRNA: 3'- uGCGGU-----GCguCA--------------AGGGCGCGGUGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 8095 | 0.7 | 0.221564 |
Target: 5'- aGCGCgCGCGCAGcUCgCCGCGCUcgccgagGCGcCg -3' miRNA: 3'- -UGCG-GUGCGUCaAG-GGCGCGG-------UGCaG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 26523 | 0.7 | 0.221564 |
Target: 5'- aGCGCC-UGCAGUUucaggucgugcacCUCGUGCCACGg- -3' miRNA: 3'- -UGCGGuGCGUCAA-------------GGGCGCGGUGCag -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 322 | 0.67 | 0.339918 |
Target: 5'- cCGCCuuguACGCA--UCgCGCGCCGCGg- -3' miRNA: 3'- uGCGG----UGCGUcaAGgGCGCGGUGCag -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 40654 | 0.67 | 0.339918 |
Target: 5'- cAUGCCGCGCAGcuugcgCUCGUGCUcgggGCGaUCg -3' miRNA: 3'- -UGCGGUGCGUCaa----GGGCGCGG----UGC-AG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 16237 | 0.67 | 0.339918 |
Target: 5'- cGCGCCGUGCAGgacaUCCUGCucgacGCCAUGa- -3' miRNA: 3'- -UGCGGUGCGUCa---AGGGCG-----CGGUGCag -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 38421 | 0.67 | 0.331876 |
Target: 5'- cGCGCCGCGgAuGUUggUCUuCGCCAUGUCg -3' miRNA: 3'- -UGCGGUGCgU-CAA--GGGcGCGGUGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 8631 | 0.67 | 0.323975 |
Target: 5'- uCGCCGCgaucgaGCAGaUCgaccgCCGCGCCACGa- -3' miRNA: 3'- uGCGGUG------CGUCaAG-----GGCGCGGUGCag -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 1252 | 0.67 | 0.323975 |
Target: 5'- -gGCCGucUGCAGUUCCUcUGCCuCGUCc -3' miRNA: 3'- ugCGGU--GCGUCAAGGGcGCGGuGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 21683 | 0.67 | 0.34481 |
Target: 5'- cCGUCGacaaagauauucgaUGCAGUgCCCGCaacagacaguccgGCCACGUCg -3' miRNA: 3'- uGCGGU--------------GCGUCAaGGGCG-------------CGGUGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 22413 | 0.66 | 0.356421 |
Target: 5'- aGCGCCACGgAGgcugacaCCGgGCggcaGCGUCa -3' miRNA: 3'- -UGCGGUGCgUCaag----GGCgCGg---UGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 11561 | 0.66 | 0.356421 |
Target: 5'- cGCGCCauugaucgcGCGCAGaaggaacUCgCCGCGCgCACGgUCg -3' miRNA: 3'- -UGCGG---------UGCGUCa------AG-GGCGCG-GUGC-AG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 9667 | 0.66 | 0.364881 |
Target: 5'- uGCGCUguACGCGGUUgCCgaaGCGCgCACG-Cg -3' miRNA: 3'- -UGCGG--UGCGUCAAgGG---CGCG-GUGCaG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 24472 | 0.66 | 0.364881 |
Target: 5'- uCGUCGCgGCGGacaggUUCCGgGCCcACGUCg -3' miRNA: 3'- uGCGGUG-CGUCa----AGGGCgCGG-UGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 9624 | 0.66 | 0.373479 |
Target: 5'- aGCGCCGCGCuaccccgccgugGGUgaaCCGCGCgGCu-- -3' miRNA: 3'- -UGCGGUGCG------------UCAag-GGCGCGgUGcag -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 35138 | 0.66 | 0.382214 |
Target: 5'- gACGCCGa-CAGcgCCUGCGCaCGCGa- -3' miRNA: 3'- -UGCGGUgcGUCaaGGGCGCG-GUGCag -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 392 | 0.66 | 0.391083 |
Target: 5'- cGCGCCGCGCAcGcaCCaCGCGagCACGcCg -3' miRNA: 3'- -UGCGGUGCGU-CaaGG-GCGCg-GUGCaG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 42070 | 1.08 | 0.000263 |
Target: 5'- cACGCCACGCAGUUCCCGCGCCACGUCu -3' miRNA: 3'- -UGCGGUGCGUCAAGGGCGCGGUGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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